Non-Coding RNA Search

Ss1.1-rssp05_g18.5

Sequence:


               
               CAGCAACGCCAGATCCGAGACGCATCTTTGACTACACCACAGCTCACGGCCACTCTGGAT
GCTTAACCCACTGAGAGAGGCCAGGGATCGAACTTGCAACCTCATGGTTCCTAGTTGGAT
TCGTTTCCACTGTGCCACGACGGGAACTCCTAACAAACTTTTGAACTATCTGAAAGTTCT
AAAAGAGAAATTTAGTCCTGCCAAAGTGAAAAACATTTACTTTAATGATGACAGAGAAAC
TTGACACTAACCTGTTACTTGCCAATTTCCTCTATTAGATTTAATGTGCATTATATTATT
CTAAAAACAAACTGAATAAAATGTGACATTGCAATTCTTATGGAATTTCAGTGAAATTAC
CAAATGACACTCTAACACTTTGGTGTTAGATACATAAATTAATATTGTATTGTAATACCT
CAAAAGAATAGACACACAATTGCTCGGTGTTAGGTTTAATACAAAGTATGGATTAAGCTA
CCATAGGAGTTACCTTTGTTTTCATGTACGATTCTCTTTCAAACTGAAAGCTCAATATCT
TCTTAAAGAAGAAAGTTTGTACACATTTTTGTTTGCATAATAGATTTGTTAAGTTATAAA
TTAATAGTGAATATTTCTAAGTAGAATTTCATATAAGATGTACACGTTTATCACAACAGT
GAAACCTATGTCAAAATTTTAAAACGGCTCATGAATAAAGATACTTTCTTGTAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCAACGCCAGATCCGAGACGCATCTTTGACTACACCACAGCTCACGGCCACTCTGGAT
GCTTAACCCACTGAGAGAGGCCAGGGATCGAACTTGCAACCTCATGGTTCCTAGTTGGAT
TCGTTTCCACTGTGCCACGACGGGAACTCCTAACAAACTTTTGAACTATCTGAAAGTTCT
AAAAGAGAAATTTAGTCCTGCCAAAGTGAAAAACATTTACTTTAATGATGACAGAGAAAC
TTGACACTAACCTGTTACTTGCCAATTTCCTCTATTAGATTTAATGTGCATTATATTATT
CTAAAAACAAACTGAATAAAATGTGACATTGCAATTCTTATGGAATTTCAGTGAAATTAC
CAAATGACACTCTAACACTTTGGTGTTAGATACATAAATTAATATTGTATTGTAATACCT
CAAAAGAATAGACACACAATTGCTCGGTGTTAGGTTTAATACAAAGTATGGATTAAGCTA
CCATAGGAGTTACCTTTGTTTTCATGTACGATTCTCTTTCAAACTGAAAGCTCAATATCT
TCTTAAAGAAGAAAGTTTGTACACATTTTTGTTTGCATAATAGATTTGTTAAGTTATAAA
TTAATAGTGAATATTTCTAAGTAGAATTTCATATAAGATGTACACGTTTATCACAACAGT
GAAACCTATGTCAAAATTTTAAAACGGCTCATGAATAAAGATACTTTCTTGTAAAAAAAA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               150-712, gnl|bosTau2|chr14 (35121116-35120572)
               

               
               150-712, gnl|Hg17|chr8 (107841381-107840879)
               

               
               150-712, gnl|Mm7|chr15 (41863798-41863106)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               150-712, gnl|bosTau2|chr14 (35121116-35120572)
               

               
               150-712, gnl|Hg17|chr8 (107841381-107840879)
               

               
               150-712, gnl|Mm7|chr15 (41863798-41863106)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               bfe (0.749288)
               

               
               ssp (0.13552)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.749288)
               

               
               ssp (0.13552)
               

               
               ldo (0.0970026)

	150-712, gnl\|bosTau2\|chr14 (35121116-35120572)
	150-712, gnl\|Hg17\|chr8 (107841381-107840879)
	150-712, gnl\|Mm7\|chr15 (41863798-41863106)