Non-Coding RNA Search

Ss1.1-rssp05_i9.5

Sequence:


               
               CAGCCCTCGCTCCTGCAGGAAGGGGCATCGCTCGTCCCTGGGCTCCCGAGTCCCACGTGA
GCTCTGATCGCAGCTTCCAGGAGAACATTTCGGCCTCAACCCCTGTTGCGGAATTCTTGG
ATTTAGTCAAGAGTCTTGTAATCACGTTGACTTCCCCTGGACCTGTGCTCCAAGAGTCCC
TTTTCTCTCCAGGAACCGGTCCTCCTGACCTGGAGTAGGAAGTGCAGTTGTAGGTAGCAG
GTAAGCAGCCCTTTCTCAACGGCTTGACAACCCCACGACCCCAGGTGACACCAGCAGTTT
TACGGCTCTTCTCAGTAACAGTTTTGGTTTGGAGGTTTGGAATCAGGGAACAGGGGATCT
GAGCCAGGTTTGTTTGCAATCATGTGGACTTGAATCATTTTTGCTATTTGGGGTGGAAAA
TTGAAATGATCAAGTGTTTGGTTTTTTTTTTTTTAACTTAGAAAAGCAAATATTGTGCTT
TTGTAATAAATGCCTTTCAGCAAAATTGCCAAGGGTCACTTTTCCGGTGGGGACCCACCT
GAGCCACAGTGCTGAGTTGTCACATTAGTAGGTCAGCCATCTGTAAACTGAAGTGGCCCT
AATTAGCCCAAAATGGTTAAGACCTGCCAGCCTCCAGGCAGGACGAGGACAGCCCCCTCA
CGTCTCGGCACGCTGATTTCCATCTGCAGCAAAATGCTGCTCTGCAGTCTTCCTGCATAG
GGTACTTAAAAAAAATATTAGTAATTCCACAAATGACGACATTTTAAATAGCACCACCTC
ACGCAGACAGCAGGGAGGACATTTAGCTTGGGTAGGTGACCGTCACAGTGTCTTCTGAGG
TCAAGGCTGCAGTTCCCAAGAGCCACAGCGAAGGAGTGGGCTTCAGCCTTGACTTTGGGG
AGCGGCTGACCAATCAGACCCCGAGCCTTACCCCCAAGAGTCTGCGGATCCGTAGACAAG
GCACATCACGTCTTCCCAACCTTCCTCAGGTGTGAACACCCGCGCCTTGTTTACTGTCAC
ATTTGTGTCCTCTGGAGTTTGAGGGAAGCTGTCACGCTTACTGTGATGTCTTACACAGAA
TTGTAACCTTATAGCTGCTGGAGGGAATGTCCACATTCGAAGGCAAAGCCAACCACATGT
TAGTTGCACTCAGTACCTATGTATGACAGACACATTAAGTGAATGTTTTCAGGTCAACAA
TATTTAGTACATGTAAATAAGGACAAAATTTGATAAATACGGTAAATTAAGTTATAGCGT
GTCATTTGATTTTTATTTTGCTCTTGTTATTTAATTTTCCTGATGCTCCGCATCAGGGCT
TGTGCCTAGGCAGTAGAGACCTGGTCTGTAACCCACTTTGCAGGTCGTGTGCACCCCGGT
GCGCCGATGGAAGGGGCTCATGCCCAGGGACACCCATGGCTGCTGATGGCCACTGCCTGG
CTCTCCAATTTGCCCTCTTTCTCTCTTTAATTCTGATTTACTGTGACAACCTAATAAAGT
AGAAACACAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCCCTCGCTCCTGCAGGAAGGGGCATCGCTCGTCCCTGGGCTCCCGAGTCCCACGTGA
GCTCTGATCGCAGCTTCCAGGAGAACATTTCGGCCTCAACCCCTGTTGCGGAATTCTTGG
ATTTAGTCAAGAGTCTTGTAATCACGTTGACTTCCCCTGGACCTGTGCTCCAAGAGTCCC
TTTTCTCTCCAGGAACCGGTCCTCCTGACCTGGAGTAGGAAGTGCAGTTGTAGGTAGCAG
GTAAGCAGCCCTTTCTCAACGGCTTGACAACCCCACGACCCCAGGTGACACCAGCAGTTT
TACGGCTCTTCTCAGTAACAGTTTTGGTTTGGAGGTTTGGAATCAGGGAACAGGGGATCT
GAGCCAGGTTTGTTTGCAATCATGTGGACTTGAATCATTTTTGCTATTTGGGGTGGAAAA
TTGAAATGATCAAGTGTTTGGTTTTTTTTTTTTTAACTTAGAAAAGCAAATATTGTGCTT
TTGTAATAAATGCCTTTCAGCAAAATTGCCAAGGGTCACTTTTCCGGTGGGGACCCACCT
GAGCCACAGTGCTGAGTTGTCACATTAGTAGGTCAGCCATCTGTAAACTGAAGTGGCCCT
AATTAGCCCAAAATGGTTAAGACCTGCCAGCCTCCAGGCAGGACGAGGACAGCCCCCTCA
CGTCTCGGCACGCTGATTTCCATCTGCAGCAAAATGCTGCTCTGCAGTCTTCCTGCATAG
GGTACTTAAAAAAAATATTAGTAATTCCACAAATGACGACATTTTAAATAGCACCACCTC
ACGCAGACAGCAGGGAGGACATTTAGCTTGGGTAGGTGACCGTCACAGTGTCTTCTGAGG
TCAAGGCTGCAGTTCCCAAGAGCCACAGCGAAGGAGTGGGCTTCAGCCTTGACTTTGGGG
AGCGGCTGACCAATCAGACCCCGAGCCTTACCCCCAAGAGTCTGCGGATCCGTAGACAAG
GCACATCACGTCTTCCCAACCTTCCTCAGGTGTGAACACCCGCGCCTTGTTTACTGTCAC
ATTTGTGTCCTCTGGAGTTTGAGGGAAGCTGTCACGCTTACTGTGATGTCTTACACAGAA
TTGTAACCTTATAGCTGCTGGAGGGAATGTCCACATTCGAAGGCAAAGCCAACCACATGT
TAGTTGCACTCAGTACCTATGTATGACAGACACATTAAGTGAATGTTTTCAGGTCAACAA
TATTTAGTACATGTAAATAAGGACAAAATTTGATAAATACGGTAAATTAAGTTATAGCGT
GTCATTTGATTTTTATTTTGCTCTTGTTATTTAATTTTCCTGATGCTCCGCATCAGGGCT
TGTGCCTAGGCAGTAGAGACCTGGTCTGTAACCCACTTTGCAGGTCGTGTGCACCCCGGT
GCGCCGATGGAAGGGGCTCATGCCCAGGGACACCCATGGCTGCTGATGGCCACTGCCTGG
CTCTCCAATTTGCCCTCTTTCTCTCTTTAATTCTGATTTACTGTGACAACCTAATAAAGT
AGAAACACAGCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               506-618, - strand, RNAz p=0.836039

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               506-618, - strand, RNAz p=0.836039

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               196-1512, gnl|bosTau2|chr13 (25053348-25054682)
               

               
               196-1512, gnl|Hg17|chr20 (20319622-20318272)
               

               
               196-1512, gnl|Mm7|chr2 (145983609-145982226)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               196-1512, gnl|bosTau2|chr13 (25053348-25054682)
               

               
               196-1512, gnl|Hg17|chr20 (20319622-20318272)
               

               
               196-1512, gnl|Mm7|chr2 (145983609-145982226)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               pro (0.512033)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               fat (0.147427)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ret (0.128733)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               nep (0.183925)
               

               
               ill (0.175593)
               

               
               fat (0.147427)
               

               
               ssp (0.13552)
               

               
               lyg (0.133103)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ret (0.128733)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)

	196-1512, gnl\|bosTau2\|chr13 (25053348-25054682)
	196-1512, gnl\|Hg17\|chr20 (20319622-20318272)
	196-1512, gnl\|Mm7\|chr2 (145983609-145982226)

	pro (0.512033)
	nep (0.183925)
	ill (0.175593)
	fat (0.147427)
	ssp (0.13552)
	lyg (0.133103)
	ute (0.132784)
	cov (0.132153)
	ret (0.128733)
	jca (0.11396)
	eje (0.0988338)