Non-Coding RNA Search

Ss1.1-rssp05_p7.5

Sequence:


               
               GCTCTGCGGGGTCCCGCACCCTTCCCAGCAGTTCCCAGGCTCGGTCGCCCTGCCCCCAGG
ATGGTCCCCTCTACTCTCCCCTCCTCTGGCCCCGCTCCTCCCCCTCGCGTTCACAAGGCA
GAGGCAGCACCAGCTGTGTGTGTCCGGCAGGCTTCTGCATTGAGGCCGGGCAGGGTGGTG
CGGGTCCTAATTGCAGCGCCACAGCTGCTCCGGCTTGGAGGACTGATTTTGTAAGGTGGA
GGCTGCGGCAGGGGCGGATTTCATACCAGGTGCCACTGTGAAATATCAATCAGACTTTAC
AATGACAACCTATTTGGAATTCATCCAACAAAATGAAGAACAAGATGGAATCCGATTTAG
TTGGAATGTTTGGCCATCAAGTCGACTAGAAGCTATAAGAATGGTGGTTCCAGTAGCAGC
CCTATTCACACCAGATTTGCCAACTCTTCAGTAAGAACCTGTTGTGTGGAGTAGGACCAC
TTGCCGTGCAGTTTTTAATCCTTTGTGGTAATTAAAGTATATGGAAAAAGCTAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCTGCGGGGTCCCGCACCCTTCCCAGCAGTTCCCAGGCTCGGTCGCCCTGCCCCCAGG
ATGGTCCCCTCTACTCTCCCCTCCTCTGGCCCCGCTCCTCCCCCTCGCGTTCACAAGGCA
GAGGCAGCACCAGCTGTGTGTGTCCGGCAGGCTTCTGCATTGAGGCCGGGCAGGGTGGTG
CGGGTCCTAATTGCAGCGCCACAGCTGCTCCGGCTTGGAGGACTGATTTTGTAAGGTGGA
GGCTGCGGCAGGGGCGGATTTCATACCAGGTGCCACTGTGAAATATCAATCAGACTTTAC
AATGACAACCTATTTGGAATTCATCCAACAAAATGAAGAACAAGATGGAATCCGATTTAG
TTGGAATGTTTGGCCATCAAGTCGACTAGAAGCTATAAGAATGGTGGTTCCAGTAGCAGC
CCTATTCACACCAGATTTGCCAACTCTTCAGTAAGAACCTGTTGTGTGGAGTAGGACCAC
TTGCCGTGCAGTTTTTAATCCTTTGTGGTAATTAAAGTATATGGAAAAAGCTAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55640641|ref|XP_509916.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55640641|ref|XP_509916.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               280-535, gnl|bosTau2|chr21 (32309048-32309318)
               

               
               280-535, gnl|Hg17|chr14 (38635095-38634826)
               

               
               280-535, gnl|Mm7|chr12 (56942313-56942045)
               


               
               299-411, gnl|bosTau2|chr13 (24263679-24263791)
               

               
               299-411, gnl|Hg17|chr20 (18439477-18439589)
               

               
               299-411, gnl|Mm7|chr2 (144300075-144300187)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               280-535, gnl|bosTau2|chr21 (32309048-32309318)
               

               
               280-535, gnl|Hg17|chr14 (38635095-38634826)
               

               
               280-535, gnl|Mm7|chr12 (56942313-56942045)
               


               
               299-411, gnl|bosTau2|chr13 (24263679-24263791)
               

               
               299-411, gnl|Hg17|chr20 (18439477-18439589)
               

               
               299-411, gnl|Mm7|chr2 (144300075-144300187)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               ebs (0.236602)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               liv (0.146284)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.236602)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               liv (0.146284)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               ova (0.129132)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	280-535, gnl\|bosTau2\|chr21 (32309048-32309318)
	280-535, gnl\|Hg17\|chr14 (38635095-38634826)
	280-535, gnl\|Mm7\|chr12 (56942313-56942045)

	299-411, gnl\|bosTau2\|chr13 (24263679-24263791)
	299-411, gnl\|Hg17\|chr20 (18439477-18439589)
	299-411, gnl\|Mm7\|chr2 (144300075-144300187)

	ebs (0.236602)
	nlu (0.191681)
	fbs (0.175346)
	liv (0.146284)
	ssp (0.13552)
	ute (0.132784)
	ova (0.129132)
	ecc (0.115035)
	jca (0.11396)