Non-Coding RNA Search

Ss1.1-rssp07_d5.5

Sequence:


               
               GCCGCCGCCGCCGCCGCCGCCATCCTCTCTGGGGCCCCTGCTACCCTTGCAGCGGGAGCC
GCTGTACAACTGGCAGGCGACCAAGGCGTCGCTGAAGGAGCGCTTCGCCTTCCTCTTCAA
CTCGGAGTTGCTGAGCGATGTGCGCTTCGTGCTGGGCAAGGGCCGCGGCGGTGCCGCCGC
CGCAGCCGGGGGTCCGCAGCGCATCCCCGCCCACCGCTTCGTGCTGGCCGCCGGCAGCGC
TGTGTTCGACGCCATGTTCAACGGCGGCATGGCCACCACTTCGGCCGAGATCGAGCTGCC
CGACGTGGAGCCCGCCGCCTTCCTGGCGCTGCTGAGATTTCTGTATTCAGATGAAGTTCA
GATTGGCCCAGAAACAGTTATGACCACTCTTTATACTGCGAAGAAATATGCAGTCCCAGC
CTTGGAAGCACATTGTGTGGAATTTCTCACCAAACATCTTAGGGCAGATAATGCCTTTAT
GTTACTTACTCAGGCCCGATTATTTGATGAACCTCAGCTTGCTAGTCTTTGTCTAGACAC
AATAGACAAAAGCACAATGGATGCAATAAGTGCAGAAGGGTTTACTGATATTGATATAGA
CACACTCTGTGCAGTTCTAGAAAGAGACACTCTTAGTATCAGAGAAAGTCGACTTTTTGG
AGCTGTTGTGCGATGGGCAGAAGCAGAGTGTCAAAGACAACAATTGCCTGTGACTTTTGG
AAATAAACAGAAAGTTCTAGGGAAAGCACTGTCATTGATCCGGTTCCCACTGATGACCAT
TGAGGAGTTTGCAGCTGGTCCTGCTCAGTCTGGAATTCTGTCAGATCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCCGCCGCCGCCGCCGCCATCCTCTCTGGGGCCCCTGCTACCCTTGCAGCGGGAGCC
GCTGTACAACTGGCAGGCGACCAAGGCGTCGCTGAAGGAGCGCTTCGCCTTCCTCTTCAA
CTCGGAGTTGCTGAGCGATGTGCGCTTCGTGCTGGGCAAGGGCCGCGGCGGTGCCGCCGC
CGCAGCCGGGGGTCCGCAGCGCATCCCCGCCCACCGCTTCGTGCTGGCCGCCGGCAGCGC
TGTGTTCGACGCCATGTTCAACGGCGGCATGGCCACCACTTCGGCCGAGATCGAGCTGCC
CGACGTGGAGCCCGCCGCCTTCCTGGCGCTGCTGAGATTTCTGTATTCAGATGAAGTTCA
GATTGGCCCAGAAACAGTTATGACCACTCTTTATACTGCGAAGAAATATGCAGTCCCAGC
CTTGGAAGCACATTGTGTGGAATTTCTCACCAAACATCTTAGGGCAGATAATGCCTTTAT
GTTACTTACTCAGGCCCGATTATTTGATGAACCTCAGCTTGCTAGTCTTTGTCTAGACAC
AATAGACAAAAGCACAATGGATGCAATAAGTGCAGAAGGGTTTACTGATATTGATATAGA
CACACTCTGTGCAGTTCTAGAAAGAGACACTCTTAGTATCAGAGAAAGTCGACTTTTTGG
AGCTGTTGTGCGATGGGCAGAAGCAGAGTGTCAAAGACAACAATTGCCTGTGACTTTTGG
AAATAAACAGAAAGTTCTAGGGAAAGCACTGTCATTGATCCGGTTCCCACTGATGACCAT
TGAGGAGTTTGCAGCTGGTCCTGCTCAGTCTGGAATTCTGTCAGATCG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61873116|ref|XP_617208.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61873116|ref|XP_617208.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               597-715, + strand, RNAz p=0.802116

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               597-715, + strand, RNAz p=0.802116

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               4-336, gnl|bosTau2|chr21 (18173653-18173982)
               

               
               4-336, gnl|Hg17|chr15 (81526836-81526507)
               

               
               4-336, gnl|Mm7|chr7 (77702608-77702261)
               


               
               597-799, gnl|bosTau2|chr21 (17375631-17375833)
               

               
               597-799, gnl|Hg17|chr15 (81501684-81501482)
               

               
               597-799, gnl|Mm7|chr7 (77679230-77679028)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-336, gnl|bosTau2|chr21 (18173653-18173982)
               

               
               4-336, gnl|Hg17|chr15 (81526836-81526507)
               

               
               4-336, gnl|Mm7|chr7 (77702608-77702261)
               


               
               597-799, gnl|bosTau2|chr21 (17375631-17375833)
               

               
               597-799, gnl|Hg17|chr15 (81501684-81501482)
               

               
               597-799, gnl|Mm7|chr7 (77679230-77679028)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               ssp (0.271039)
               

               
               tes (0.207814)
               

               
               nep (0.183925)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.271039)
               

               
               tes (0.207814)
               

               
               nep (0.183925)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	4-336, gnl\|bosTau2\|chr21 (18173653-18173982)
	4-336, gnl\|Hg17\|chr15 (81526836-81526507)
	4-336, gnl\|Mm7\|chr7 (77702608-77702261)

	597-799, gnl\|bosTau2\|chr21 (17375631-17375833)
	597-799, gnl\|Hg17\|chr15 (81501684-81501482)
	597-799, gnl\|Mm7\|chr7 (77679230-77679028)

	ssp (0.271039)
	tes (0.207814)
	nep (0.183925)
	cty (0.10408)
	ldo (0.0970026)