Non-Coding RNA Search

Ss1.1-rssp07_p23.5

Sequence:


               
               GGGTCATGGAAATCAGGGATGCTAAAACATAGGATCCAACTCCAAACTTAAGTCAAAATA
AGCCATTTAGCATGTGCAATTTCTTGTAAAAGGAAGTTTCTACCCCCACTGCCTTTTATA
GGCAGGTCTATTCTCACCACTAATCTCTTGGAAAAATCTTTGAAAGCAGTTTAAAAAAAG
AGACAAAGAGATGAAAACATCACATTATGTAACCAAAGATTACACTGTATCTGCTAAGAT
ACCAAATTTTTTAAGGGCAGGGAGGGAACAAGAATTAGTGCCTCTTTGGTAAGCTATCCA
AAGACAGACTAAAGGACTTTGCTGGTGACTGACTTATAAGAGTTCTGTGGGGTTACCCCA
CACACAATATATACATTTAGAAGAGTGGAAGATAATTTTGAAAAAAAAAATGGGATTATG
GGTCCTTCACTAAGTGATTTTTATAAGCAGAACTAGCTTTCCTTTTCTCTAGTAGTTGCT
GAGCAAATTCTTAAAGCTCCATCATTGCATGATTGGAAATGGAGCTGTCTTGGCCACTGT
ATTTTCTAGTGCCGATGTTAGCATATCTGAAGATGTGAAGCCCTTACTGAGAAGGGGAGC
ATATAAAGGACTAGATTTTGCACTAGAGGGGACAGCAGGCAGAAATTCTCATTTCTGCCC
ACTTTGAATGGCACAAAAAAGTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGTCATGGAAATCAGGGATGCTAAAACATAGGATCCAACTCCAAACTTAAGTCAAAATA
AGCCATTTAGCATGTGCAATTTCTTGTAAAAGGAAGTTTCTACCCCCACTGCCTTTTATA
GGCAGGTCTATTCTCACCACTAATCTCTTGGAAAAATCTTTGAAAGCAGTTTAAAAAAAG
AGACAAAGAGATGAAAACATCACATTATGTAACCAAAGATTACACTGTATCTGCTAAGAT
ACCAAATTTTTTAAGGGCAGGGAGGGAACAAGAATTAGTGCCTCTTTGGTAAGCTATCCA
AAGACAGACTAAAGGACTTTGCTGGTGACTGACTTATAAGAGTTCTGTGGGGTTACCCCA
CACACAATATATACATTTAGAAGAGTGGAAGATAATTTTGAAAAAAAAAATGGGATTATG
GGTCCTTCACTAAGTGATTTTTATAAGCAGAACTAGCTTTCCTTTTCTCTAGTAGTTGCT
GAGCAAATTCTTAAAGCTCCATCATTGCATGATTGGAAATGGAGCTGTCTTGGCCACTGT
ATTTTCTAGTGCCGATGTTAGCATATCTGAAGATGTGAAGCCCTTACTGAGAAGGGGAGC
ATATAAAGGACTAGATTTTGCACTAGAGGGGACAGCAGGCAGAAATTCTCATTTCTGCCC
ACTTTGAATGGCACAAAAAAGTTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               107-197, - strand, RNAz p=0.925918

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               107-197, - strand, RNAz p=0.925918

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-197, gnl|bosTau2|chrX (24874218-24874417)
               

               
               1-197, gnl|canFam2|chrX (55082995-55084077)
               

               
               1-197, gnl|dasNov1|scaffold_22041 (17364-16278)
               

               
               1-197, gnl|echTel1|scaffold_312735 (130980-132033)
               

               
               1-197, gnl|hg17|chrX (66729887-66730999)
               

               
               1-197, gnl|Hg17|chrX (66730697-66730885)
               

               
               1-197, gnl|loxAfr1|scaffold_4813 (33507-32394)
               

               
               1-197, gnl|mm7|chrX (93647420-93648533)
               

               
               1-197, gnl|Mm7|chrX (93648235-93648422)
               

               
               1-197, gnl|monDom2|scaffold_138 (322514-321219)
               

               
               1-197, gnl|oryCun1|scaffold_204192 (78249-77078)
               

               
               1-197, gnl|panTro1|chrX (68704813-68705924)
               

               
               1-197, gnl|rheMac2|chrX (66617673-66618791)
               

               
               1-197, gnl|rn3|chrX (86195207-86196308)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-197, gnl|bosTau2|chrX (24874218-24874417)
               

               
               1-197, gnl|canFam2|chrX (55082995-55084077)
               

               
               1-197, gnl|dasNov1|scaffold_22041 (17364-16278)
               

               
               1-197, gnl|echTel1|scaffold_312735 (130980-132033)
               

               
               1-197, gnl|hg17|chrX (66729887-66730999)
               

               
               1-197, gnl|Hg17|chrX (66730697-66730885)
               

               
               1-197, gnl|loxAfr1|scaffold_4813 (33507-32394)
               

               
               1-197, gnl|mm7|chrX (93647420-93648533)
               

               
               1-197, gnl|Mm7|chrX (93648235-93648422)
               

               
               1-197, gnl|monDom2|scaffold_138 (322514-321219)
               

               
               1-197, gnl|oryCun1|scaffold_204192 (78249-77078)
               

               
               1-197, gnl|panTro1|chrX (68704813-68705924)
               

               
               1-197, gnl|rheMac2|chrX (66617673-66618791)
               

               
               1-197, gnl|rn3|chrX (86195207-86196308)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               ssp (0.13552)
               

               
               pgl (0.118483)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.13552)
               

               
               pgl (0.118483)

	1-197, gnl\|bosTau2\|chrX (24874218-24874417)
	1-197, gnl\|canFam2\|chrX (55082995-55084077)
	1-197, gnl\|dasNov1\|scaffold_22041 (17364-16278)
	1-197, gnl\|echTel1\|scaffold_312735 (130980-132033)
	1-197, gnl\|hg17\|chrX (66729887-66730999)
	1-197, gnl\|Hg17\|chrX (66730697-66730885)
	1-197, gnl\|loxAfr1\|scaffold_4813 (33507-32394)
	1-197, gnl\|mm7\|chrX (93647420-93648533)
	1-197, gnl\|Mm7\|chrX (93648235-93648422)
	1-197, gnl\|monDom2\|scaffold_138 (322514-321219)
	1-197, gnl\|oryCun1\|scaffold_204192 (78249-77078)
	1-197, gnl\|panTro1\|chrX (68704813-68705924)
	1-197, gnl\|rheMac2\|chrX (66617673-66618791)
	1-197, gnl\|rn3\|chrX (86195207-86196308)