Ss1.1-rssp09_d7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGAATCTCGCGAGGGTAGCTTCGGGAGTCCCCACTGCAGCTGTGGGGCGCGGGTCTCT GCCGCGGGGACTGACTGGGCGTTTCCGTTGCCGGCGTCTCGCCGCAGGAGCTGTATATTG AGGACGATGTCTGGAAGCTTCTACTTTGTCATTGTTGGTCACCATGACAATCCAGTTTTT GAAATGGAGTTTTTGCCAGCCGGAAAAGCAGAATCCAAAGACGATCACCGCCACCTGAAC CAGTTCATAGCACACGCTGCTCTCGACCTGGTGGACGAGAACATGTGGCTGTCAAACAAC ATGTACTTGAAGACTGTGGACAAGTTCAATGAGTGGTTTGTCTCGGCATTTGTAACTGCG GGTCATATGAGATTTATCATGCTGCATGACGTAAGGCAAGAAGACGGAATAAAGAACTTC TTTACTGATGTCTATGATTTATACATAAAGTTTGCAATGAATCCATTTTATGAACCCAAT TCTCCTATTCGATCAAGCGCATTTGACAGAAAAGTTCAGTTTCTTGGGAAGAAACACCTT TTAAGCTGAATGCAGAAAATTCAGAAATAAACAATGTCACTACAAGGGGTATACTCAAAA ACGTGTACATTGTAAGTAACTTGATTAAATAGCATGGAAAAGTTTTTCTTGTAGCCTTGA TTTATCTACACCTAATGAAATTGCTTTTATATTTAAAAATAGTACATTCAGTTTCTTACG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGAATCTCGCGAGGGTAGCTTCGGGAGTCCCCACTGCAGCTGTGGGGCGCGGGTCTCT GCCGCGGGGACTGACTGGGCGTTTCCGTTGCCGGCGTCTCGCCGCAGGAGCTGTATATTG AGGACGATGTCTGGAAGCTTCTACTTTGTCATTGTTGGTCACCATGACAATCCAGTTTTT GAAATGGAGTTTTTGCCAGCCGGAAAAGCAGAATCCAAAGACGATCACCGCCACCTGAAC CAGTTCATAGCACACGCTGCTCTCGACCTGGTGGACGAGAACATGTGGCTGTCAAACAAC ATGTACTTGAAGACTGTGGACAAGTTCAATGAGTGGTTTGTCTCGGCATTTGTAACTGCG GGTCATATGAGATTTATCATGCTGCATGACGTAAGGCAAGAAGACGGAATAAAGAACTTC TTTACTGATGTCTATGATTTATACATAAAGTTTGCAATGAATCCATTTTATGAACCCAAT TCTCCTATTCGATCAAGCGCATTTGACAGAAAAGTTCAGTTTCTTGGGAAGAAACACCTT TTAAGCTGAATGCAGAAAATTCAGAAATAAACAATGTCACTACAAGGGGTATACTCAAAA ACGTGTACATTGTAAGTAACTTGATTAAATAGCATGGAAAAGTTTTTCTTGTAGCCTTGA TTTATCTACACCTAATGAAATTGCTTTTATATTTAAAAATAGTACATTCAGTTTCTTACG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 215-333, - strand, RNAz p=0.553299 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 215-333, - strand, RNAz p=0.553299 |
| Aligned organism(s): 61 entry(ies) | More info |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
| 215-368, gnl|bosTau2|chrX (41833876-41833723) | |
| 215-368, gnl|canFam2|chrX (10088328-10088484) | |
| 215-368, gnl|canFam2|chrX (10088330-10088459) | |
| 215-368, gnl|canFam2|chrX (10088485-10088342) | |
| 215-368, gnl|canFam2|chrX (10088326-10088488) | |
| 215-368, gnl|danRer3|chr11 (28400-28555) | |
| 215-368, gnl|danRer3|chr11 (28555-28413) | |
| 215-368, gnl|danRer3|chr11 (28400-28559) | |
| 215-368, gnl|dasNov1|scaffold_1457 (77275-77427) | |
| 215-368, gnl|dasNov1|scaffold_1457 (77428-77287) | |
| 215-368, gnl|dasNov1|scaffold_30489 (41461-41617) | |
| 215-368, gnl|dasNov1|scaffold_30489 (41459-41621) | |
| 215-368, gnl|echTel1|scaffold_27785 (1560-1698) | |
| 215-368, gnl|echTel1|scaffold_285572 (1781-1907) | |
| 215-368, gnl|echTel1|scaffold_302814 (3058-2898) | |
| 215-368, gnl|echTel1|scaffold_302814 (3060-2894) | |
| 215-368, gnl|fr1|chrUn (233595529-233595375) | |
| 215-368, gnl|fr1|chrUn (233595529-233595375) | |
| 215-368, gnl|fr1|chrUn (233595532-233595371) | |
| 215-368, gnl|galGal2|chr1 (116214703-116214846) | |
| 215-368, gnl|galGal2|chr1 (116214862-116214700) | |
| 215-368, gnl|hg17|chr19 (62568108-62568251) | |
| 215-368, gnl|hg17|chr8 (72523773-72523914) | |
| 215-368, gnl|hg17|chrX (13494296-13494458) | |
| 215-368, gnl|Hg17|chrX (13494459-13494306) | |
| 215-368, gnl|hg17|chrY (18348509-18348665) | |
| 215-368, gnl|loxAfr1|scaffold_1167 (106326-106482) | |
| 215-368, gnl|loxAfr1|scaffold_1167 (106328-106482) | |
| 215-368, gnl|loxAfr1|scaffold_1167 (106465-106340) | |
| 215-368, gnl|loxAfr1|scaffold_1167 (106324-106486) | |
| 215-368, gnl|mm7|chr11 (51642579-51642733) | |
| 215-368, gnl|mm7|chr4 (143024414-143024274) | |
| 215-368, gnl|mm7|chrX (161224308-161224152) | |
| 215-368, gnl|mm7|chrX (161224310-161224148) | |
| 215-368, gnl|Mm7|chrX (161224145-161224298) | |
| 215-368, gnl|monDom2|scaffold_25 (27360369-27360213) | |
| 215-368, gnl|monDom2|scaffold_25 (27360371-27360209) | |
| 215-368, gnl|monDom2|scaffold_8 (12348155-12348002) | |
| 215-368, gnl|monDom2|scaffold_8 (12348001-12348144) | |
| 215-368, gnl|oryCun1|scaffold_147531 (4101-4247) | |
| 215-368, gnl|oryCun1|scaffold_147531 (4093-4247) | |
| 215-368, gnl|oryCun1|scaffold_147531 (4248-4105) | |
| 215-368, gnl|oryCun1|scaffold_147531 (4100-4249) | |
| 215-368, gnl|panTro1|chr20 (60301288-60301431) | |
| 215-368, gnl|panTro1|chr7 (74623669-74623810) | |
| 215-368, gnl|panTro1|chrX (13921330-13921492) | |
| 215-368, gnl|panTro1|chrY (19047157-19047313) | |
| 215-368, gnl|rheMac2|chr19 (63204419-63204562) | |
| 215-368, gnl|rheMac2|chr8 (74014365-74014506) | |
| 215-368, gnl|rheMac2|chrX (11424291-11424450) | |
| 215-368, gnl|rheMac2|chrX (11424289-11424451) | |
| 215-368, gnl|rn3|chr10 (37204615-37204769) | |
| 215-368, gnl|rn3|chrX (48746812-48746968) | |
| 215-368, gnl|rn3|chrX (48746969-48746826) | |
| 215-368, gnl|rn3|chrX (48746810-48746972) | |
| 215-368, gnl|xenTro1|scaffold_618 (223518-223674) | |
| 215-368, gnl|xenTro1|scaffold_618 (223675-223532) | |
| 215-368, gnl|xenTro1|scaffold_618 (223516-223678) | |
| 449-719, gnl|bosTau2|chrX (41831724-41831455) | |
| 449-719, gnl|Hg17|chrX (13492283-13492013) | |
| 449-719, gnl|Mm7|chrX (161226497-161226715) |
| Aligned organism(s): 61 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 215-368, gnl|bosTau2|chrX (41833876-41833723) | |
| 215-368, gnl|canFam2|chrX (10088328-10088484) | |
| 215-368, gnl|canFam2|chrX (10088330-10088459) | |
| 215-368, gnl|canFam2|chrX (10088485-10088342) | |
| 215-368, gnl|canFam2|chrX (10088326-10088488) | |
| 215-368, gnl|danRer3|chr11 (28400-28555) | |
| 215-368, gnl|danRer3|chr11 (28555-28413) | |
| 215-368, gnl|danRer3|chr11 (28400-28559) | |
| 215-368, gnl|dasNov1|scaffold_1457 (77275-77427) | |
| 215-368, gnl|dasNov1|scaffold_1457 (77428-77287) | |
| 215-368, gnl|dasNov1|scaffold_30489 (41461-41617) | |
| 215-368, gnl|dasNov1|scaffold_30489 (41459-41621) | |
| 215-368, gnl|echTel1|scaffold_27785 (1560-1698) | |
| 215-368, gnl|echTel1|scaffold_285572 (1781-1907) | |
| 215-368, gnl|echTel1|scaffold_302814 (3058-2898) | |
| 215-368, gnl|echTel1|scaffold_302814 (3060-2894) | |
| 215-368, gnl|fr1|chrUn (233595529-233595375) | |
| 215-368, gnl|fr1|chrUn (233595529-233595375) | |
| 215-368, gnl|fr1|chrUn (233595532-233595371) | |
| 215-368, gnl|galGal2|chr1 (116214703-116214846) | |
| 215-368, gnl|galGal2|chr1 (116214862-116214700) | |
| 215-368, gnl|hg17|chr19 (62568108-62568251) | |
| 215-368, gnl|hg17|chr8 (72523773-72523914) | |
| 215-368, gnl|hg17|chrX (13494296-13494458) | |
| 215-368, gnl|Hg17|chrX (13494459-13494306) | |
| 215-368, gnl|hg17|chrY (18348509-18348665) | |
| 215-368, gnl|loxAfr1|scaffold_1167 (106326-106482) | |
| 215-368, gnl|loxAfr1|scaffold_1167 (106328-106482) | |
| 215-368, gnl|loxAfr1|scaffold_1167 (106465-106340) | |
| 215-368, gnl|loxAfr1|scaffold_1167 (106324-106486) | |
| 215-368, gnl|mm7|chr11 (51642579-51642733) | |
| 215-368, gnl|mm7|chr4 (143024414-143024274) | |
| 215-368, gnl|mm7|chrX (161224308-161224152) | |
| 215-368, gnl|mm7|chrX (161224310-161224148) | |
| 215-368, gnl|Mm7|chrX (161224145-161224298) | |
| 215-368, gnl|monDom2|scaffold_25 (27360369-27360213) | |
| 215-368, gnl|monDom2|scaffold_25 (27360371-27360209) | |
| 215-368, gnl|monDom2|scaffold_8 (12348155-12348002) | |
| 215-368, gnl|monDom2|scaffold_8 (12348001-12348144) | |
| 215-368, gnl|oryCun1|scaffold_147531 (4101-4247) | |
| 215-368, gnl|oryCun1|scaffold_147531 (4093-4247) | |
| 215-368, gnl|oryCun1|scaffold_147531 (4248-4105) | |
| 215-368, gnl|oryCun1|scaffold_147531 (4100-4249) | |
| 215-368, gnl|panTro1|chr20 (60301288-60301431) | |
| 215-368, gnl|panTro1|chr7 (74623669-74623810) | |
| 215-368, gnl|panTro1|chrX (13921330-13921492) | |
| 215-368, gnl|panTro1|chrY (19047157-19047313) | |
| 215-368, gnl|rheMac2|chr19 (63204419-63204562) | |
| 215-368, gnl|rheMac2|chr8 (74014365-74014506) | |
| 215-368, gnl|rheMac2|chrX (11424291-11424450) | |
| 215-368, gnl|rheMac2|chrX (11424289-11424451) | |
| 215-368, gnl|rn3|chr10 (37204615-37204769) | |
| 215-368, gnl|rn3|chrX (48746812-48746968) | |
| 215-368, gnl|rn3|chrX (48746969-48746826) | |
| 215-368, gnl|rn3|chrX (48746810-48746972) | |
| 215-368, gnl|xenTro1|scaffold_618 (223518-223674) | |
| 215-368, gnl|xenTro1|scaffold_618 (223675-223532) | |
| 215-368, gnl|xenTro1|scaffold_618 (223516-223678) | |
| 449-719, gnl|bosTau2|chrX (41831724-41831455) | |
| 449-719, gnl|Hg17|chrX (13492283-13492013) | |
| 449-719, gnl|Mm7|chrX (161226497-161226715) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| cbe (0.717703) | |
| mgp (0.692042) | |
| amn (0.417711) | |
| cut (0.339847) | |
| bla (0.248694) | |
| hea (0.204499) | |
| fli (0.202881) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| mga (0.160205) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| eep (0.122564) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (0.717703) | |
| mgp (0.692042) | |
| amn (0.417711) | |
| cut (0.339847) | |
| bla (0.248694) | |
| hea (0.204499) | |
| fli (0.202881) | |
| aor (0.195274) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| mga (0.160205) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| ova (0.129132) | |
| eep (0.122564) |