Non-Coding RNA Search

Ss1.1-rssp09_h9.5

Sequence:


               
               TGGATTTGTGCCCTCCTAGCCAATTTCGCCTTGGGTTCGGTTTGTGACGGTTCTACCAGA
AGTGTTGTTCACGGACTTGCCTAGGCTGAGCTGTTTTTATAAGAAGTATTTATTTGAAAT
TGCCTTCGGGGGGCAGGGTGGAGGGGTGGGATATAAAACCTTCCGTACCCTGCTTTTTGA
GGGCAGTTAATTCTGCATCTGAAAGAAAATATGCACATCCACACATACTCCACTTGAATA
TTTCATGGTAAGGAGAAGATAGCCTTGTAACACTGTTGAGTAGGATGCAAGGTTCAAAAT
AGAACGATGGAATGACATGACTCAACAGCACTCAACTTTTGCACGTTTATCCAACTTGTA
CTGAGAACAGTGTCTAGATTTGTGTGTCACTAAGGGATGCCCAAGAAACAGAGATGGATT
TTTAACTTTTGAACTTGAACAGCAGACACCGTCTATGAAATTGCACATTTTTAAAAGGTA
GAGCTGTGTGTGTGGCTATTTAAGATGTATTGTTGGTTTTCAGGAAAGAACGCTGGAGAA
TGCCTTTTGAACGTTTTTGTTGCCACGATTAGGTGATAGTTCCTTGTGGATGCTGCCCTG
CCCATGTAAATACACTGACTCTCAGCCTTTGACTGTACTGTGCTCAATAGCAGATCATCT
CACATCCTTGAGCGCTCAGACTAGTGAAGATATTGTCGTGTATGATAAAAGAGCTAGTTG
AATTAACTGTGTGATGTTAACTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGATTTGTGCCCTCCTAGCCAATTTCGCCTTGGGTTCGGTTTGTGACGGTTCTACCAGA
AGTGTTGTTCACGGACTTGCCTAGGCTGAGCTGTTTTTATAAGAAGTATTTATTTGAAAT
TGCCTTCGGGGGGCAGGGTGGAGGGGTGGGATATAAAACCTTCCGTACCCTGCTTTTTGA
GGGCAGTTAATTCTGCATCTGAAAGAAAATATGCACATCCACACATACTCCACTTGAATA
TTTCATGGTAAGGAGAAGATAGCCTTGTAACACTGTTGAGTAGGATGCAAGGTTCAAAAT
AGAACGATGGAATGACATGACTCAACAGCACTCAACTTTTGCACGTTTATCCAACTTGTA
CTGAGAACAGTGTCTAGATTTGTGTGTCACTAAGGGATGCCCAAGAAACAGAGATGGATT
TTTAACTTTTGAACTTGAACAGCAGACACCGTCTATGAAATTGCACATTTTTAAAAGGTA
GAGCTGTGTGTGTGGCTATTTAAGATGTATTGTTGGTTTTCAGGAAAGAACGCTGGAGAA
TGCCTTTTGAACGTTTTTGTTGCCACGATTAGGTGATAGTTCCTTGTGGATGCTGCCCTG
CCCATGTAAATACACTGACTCTCAGCCTTTGACTGTACTGTGCTCAATAGCAGATCATCT
CACATCCTTGAGCGCTCAGACTAGTGAAGATATTGTCGTGTATGATAAAAGAGCTAGTTG
AATTAACTGTGTGATGTTAACTAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               238-516, gnl|bosTau2|chr11 (8322338-8322064)
               

               
               238-516, gnl|Hg17|chr2 (75031388-75031897)
               

               
               238-516, gnl|Mm7|chr6 (82751334-82750802)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               238-516, gnl|bosTau2|chr11 (8322338-8322064)
               

               
               238-516, gnl|Hg17|chr2 (75031388-75031897)
               

               
               238-516, gnl|Mm7|chr6 (82751334-82750802)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ski (0.440205)
               

               
               ssp (0.406559)
               

               
               vin (0.332557)
               

               
               ece (0.229305)
               

               
               ton (0.1755)
               

               
               hyp (0.142837)
               

               
               sug (0.127291)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.440205)
               

               
               ssp (0.406559)
               

               
               vin (0.332557)
               

               
               ece (0.229305)
               

               
               ton (0.1755)
               

               
               hyp (0.142837)
               

               
               sug (0.127291)

	238-516, gnl\|bosTau2\|chr11 (8322338-8322064)
	238-516, gnl\|Hg17\|chr2 (75031388-75031897)
	238-516, gnl\|Mm7\|chr6 (82751334-82750802)

	ski (0.440205)
	ssp (0.406559)
	vin (0.332557)
	ece (0.229305)
	ton (0.1755)
	hyp (0.142837)
	sug (0.127291)