Non-Coding RNA Search

Ss1.1-rssp09_i14.5

Sequence:


               
               TTACAAATGATTAGAAGAATCGATTCCTTCTGAGACTCATCAGATCATTTCCTGCAAAAT
CCTCATCTTGCTGTCTACTTGTGGAAAAGAAGCATACCTCTTGGAAACTACCTTCCTTAG
ACCTCAGAGTTTGAAAGAAGCAGGTGCTGAATCTTAGTTTTTCGTGAACAAGAAAAATGG
GCTGCAATAGAGACTGTGGACTCATTGCTGGTGCTGTCATTGGAGCAGTCCTGGCCGTGT
TTGGAGGTATTCTAATGCCAGTTGGAGACATGATTATTCAGAAGACAATTAAAAAGGAAG
CTGTCCTTGAAGAAGGTACAATTGCTTTTAAAAATTGGGTTAAAACAGGCACGGAAGTTT
ACAGACAGTTTTGGATCTTTGATGTGCAGAATCCAGAGGAAGTAGCAATTAATAGCAGCG
TAATTAAAGTTAAGCAAAGAGGTCCTTACACGTACAGAGTTCGTTATCTAGCCAAGGAAA
ATATAACCCAGGACCCTGAGACCCACACAGTCTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACAAATGATTAGAAGAATCGATTCCTTCTGAGACTCATCAGATCATTTCCTGCAAAAT
CCTCATCTTGCTGTCTACTTGTGGAAAAGAAGCATACCTCTTGGAAACTACCTTCCTTAG
ACCTCAGAGTTTGAAAGAAGCAGGTGCTGAATCTTAGTTTTTCGTGAACAAGAAAAATGG
GCTGCAATAGAGACTGTGGACTCATTGCTGGTGCTGTCATTGGAGCAGTCCTGGCCGTGT
TTGGAGGTATTCTAATGCCAGTTGGAGACATGATTATTCAGAAGACAATTAAAAAGGAAG
CTGTCCTTGAAGAAGGTACAATTGCTTTTAAAAATTGGGTTAAAACAGGCACGGAAGTTT
ACAGACAGTTTTGGATCTTTGATGTGCAGAATCCAGAGGAAGTAGCAATTAATAGCAGCG
TAATTAAAGTTAAGCAAAGAGGTCCTTACACGTACAGAGTTCGTTATCTAGCCAAGGAAA
ATATAACCCAGGACCCTGAGACCCACACAGTCTCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12620246|gb|AAG60625.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12620246|gb|AAG60625.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               88-297, gnl|bosTau2|chr4 (14689826-14690036)
               

               
               88-297, gnl|Hg17|chr7 (79920617-79920828)
               

               
               88-297, gnl|Mm7|chr5 (16842502-16842293)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               88-297, gnl|bosTau2|chr4 (14689826-14690036)
               

               
               88-297, gnl|Hg17|chr7 (79920617-79920828)
               

               
               88-297, gnl|Mm7|chr5 (16842502-16842293)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ssp (0.271039)
               

               
               nep (0.183925)
               

               
               ste (0.135208)
               

               
               eep (0.122564)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.271039)
               

               
               nep (0.183925)
               

               
               ste (0.135208)
               

               
               eep (0.122564)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	88-297, gnl\|bosTau2\|chr4 (14689826-14690036)
	88-297, gnl\|Hg17\|chr7 (79920617-79920828)
	88-297, gnl\|Mm7\|chr5 (16842502-16842293)

	ssp (0.271039)
	nep (0.183925)
	ste (0.135208)
	eep (0.122564)
	cty (0.10408)
	ldo (0.0970026)