Non-Coding RNA Search

Ss1.1-rssp09_n5.5

Sequence:


               
               GCTTCACAGACTTTCCCTGCTGGTACGTGAAGGACACGTACGCGGGTTCAGACAGGGACA
CATTCTCCTTTGACATCAGCTTGCCTGAGAAAATTCAGTCTTATGAGAGGATGGAATTTG
CTGTGTGCTATGAGTGCAATGGACAGACGTACTGGGACAGCAACAAAGGCAAAAGCTATA
GGATCATCCGGGCAGAGCTGAAATCCACCCAGGGAACAGCCCAGCCACAAAATGGACCAG
ATTTTGGAATAGCCCTTGACCAGTTTGGAAGCCCTCGATGTTCCTACGGTCTGTTTCCAG
AGTGGCCAAGTTATTTAGGATACGAGAAGCTTGGGCCCTACTATTAGCAACGGCAGGGCA
TGGAGCAGGGCTGAGTGGGTACAGACAAGCTGAGCTGCAGTCACCCTGTGATGGAGGTGG
AAGCCAAGAGAAGTGGTGAACTGCCTTTAGGCACAGTTTTTGAGAAGAAAGGATCCTAGT
CACTCTTTTCCTTCAATCAGCCAAGTCAGCCAGGTTTAGATCACAGAACTGGGTTCATGC
TTGGAAGAGATGGGCGTGCTGGTCTGTCTGGCACCCAAGTAACAGCAATGAGGGTCTGAG
TAGGATGGCGCCAGAGGGGTCTGGATGGGACCCAGGCCTACAGGCAGCACCGGCGAGGCC
GGAGCATGGTGGCTTAATAACGAGGTCACCTGGAGGAGCCCCTCTTCCCTGGGGTGTGGG
AAGTCAGTGCCCTGGGAGCCCTCGGTCCCCAGCACCTCCCACTGGCTCCTGGCCCCTCCT
ATTCGGGTCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTCACAGACTTTCCCTGCTGGTACGTGAAGGACACGTACGCGGGTTCAGACAGGGACA
CATTCTCCTTTGACATCAGCTTGCCTGAGAAAATTCAGTCTTATGAGAGGATGGAATTTG
CTGTGTGCTATGAGTGCAATGGACAGACGTACTGGGACAGCAACAAAGGCAAAAGCTATA
GGATCATCCGGGCAGAGCTGAAATCCACCCAGGGAACAGCCCAGCCACAAAATGGACCAG
ATTTTGGAATAGCCCTTGACCAGTTTGGAAGCCCTCGATGTTCCTACGGTCTGTTTCCAG
AGTGGCCAAGTTATTTAGGATACGAGAAGCTTGGGCCCTACTATTAGCAACGGCAGGGCA
TGGAGCAGGGCTGAGTGGGTACAGACAAGCTGAGCTGCAGTCACCCTGTGATGGAGGTGG
AAGCCAAGAGAAGTGGTGAACTGCCTTTAGGCACAGTTTTTGAGAAGAAAGGATCCTAGT
CACTCTTTTCCTTCAATCAGCCAAGTCAGCCAGGTTTAGATCACAGAACTGGGTTCATGC
TTGGAAGAGATGGGCGTGCTGGTCTGTCTGGCACCCAAGTAACAGCAATGAGGGTCTGAG
TAGGATGGCGCCAGAGGGGTCTGGATGGGACCCAGGCCTACAGGCAGCACCGGCGAGGCC
GGAGCATGGTGGCTTAATAACGAGGTCACCTGGAGGAGCCCCTCTTCCCTGGGGTGTGGG
AAGTCAGTGCCCTGGGAGCCCTCGGTCCCCAGCACCTCCCACTGGCTCCTGGCCCCTCCT
ATTCGGGTCTTC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-748, gnl|bosTau2|chr27 (14988248-14988975)
               

               
               1-748, gnl|Hg17|chr8 (9036060-9035283)
               

               
               1-748, gnl|Mm7|chr8 (34149875-34150539)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-748, gnl|bosTau2|chr27 (14988248-14988975)
               

               
               1-748, gnl|Hg17|chr8 (9036060-9035283)
               

               
               1-748, gnl|Mm7|chr8 (34149875-34150539)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               tbr (0.154178)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.154178)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)

	1-748, gnl\|bosTau2\|chr27 (14988248-14988975)
	1-748, gnl\|Hg17\|chr8 (9036060-9035283)
	1-748, gnl\|Mm7\|chr8 (34149875-34150539)