Non-Coding RNA Search

Ss1.1-rssp09_o14.5

Sequence:


               
               GCGAGGCTGAGTTCCAGAAGATGCGCCGGGACCTGGAGGAGGCCACCCTGCAGCATGAGG
GCACAGCGGCCGCGTTGAGGAAGAAGCACGCGGACAGCGTGGCTGAGCTGGGGGAGCAGA
TCGACAACCTGCAGAGGGTCAAGCAGAAGCTGGAGAAGGAGAAGAGTGAGATGAAGATGG
AGATCGACGACCTTGCTAGCAACATGGAGACCGTCTCCAAAGCCAAGGGAAACCTAGAGA
AGATGTGCCGCACTCTGGAGGACCAGCTGAGCGAGCTGAAATCCAAGGAGGAAGAGCAGC
AGCGGCTGATCAACGACCTGACGGCTCAGAGGGGACGTCTGCAGACAGAATCTGGTGAAT
TTTCACGTCAGCTAGATGAAAAAGAAGCTCTGGTGTCTCAGTTATCAAGGGGCAAACAAG
CATATACTCAACAGATTGAGGAATTAAAGAGGCAACTTGAGGAGGAGATAAAGGCCAAGA
ATGCCCTGGCGCACGCTCTGCAGTCCTCCCGCCACGACTGCGACCTGCTGCGGGAACAGT
ATGAGGAGGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGAGGCTGAGTTCCAGAAGATGCGCCGGGACCTGGAGGAGGCCACCCTGCAGCATGAGG
GCACAGCGGCCGCGTTGAGGAAGAAGCACGCGGACAGCGTGGCTGAGCTGGGGGAGCAGA
TCGACAACCTGCAGAGGGTCAAGCAGAAGCTGGAGAAGGAGAAGAGTGAGATGAAGATGG
AGATCGACGACCTTGCTAGCAACATGGAGACCGTCTCCAAAGCCAAGGGAAACCTAGAGA
AGATGTGCCGCACTCTGGAGGACCAGCTGAGCGAGCTGAAATCCAAGGAGGAAGAGCAGC
AGCGGCTGATCAACGACCTGACGGCTCAGAGGGGACGTCTGCAGACAGAATCTGGTGAAT
TTTCACGTCAGCTAGATGAAAAAGAAGCTCTGGTGTCTCAGTTATCAAGGGGCAAACAAG
CATATACTCAACAGATTGAGGAATTAAAGAGGCAACTTGAGGAGGAGATAAAGGCCAAGA
ATGCCCTGGCGCACGCTCTGCAGTCCTCCCGCCACGACTGCGACCTGCTGCGGGAACAGT
ATGAGGAGGAGC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-228, gnl|bosTau2|chr19 (22708627-22708402)
               

               
               3-228, gnl|Hg17|chr17 (10482309-10482084)
               

               
               3-228, gnl|Mm7|chr11 (67176205-67176430)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-228, gnl|bosTau2|chr19 (22708627-22708402)
               

               
               3-228, gnl|Hg17|chr17 (10482309-10482084)
               

               
               3-228, gnl|Mm7|chr11 (67176205-67176430)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nms (0.213858)
               

               
               mas (0.210305)
               

               
               ssp (0.13552)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               ssp (0.13552)

	3-228, gnl\|bosTau2\|chr19 (22708627-22708402)
	3-228, gnl\|Hg17\|chr17 (10482309-10482084)
	3-228, gnl\|Mm7\|chr11 (67176205-67176430)