Non-Coding RNA Search

Ss1.1-rssp10_e3.5

Sequence:


               
               TAATTTTGCACATGACTTTAAAGTGGGTCCCTTGAAGGTGAAACCGTGTCTTGGTGCAGC
CCTTGGGATCTT------------------------------------------------
------------------------------------------------TGAAATGGGGTT
AGTCTGAGTATGAACTGGATTTTGTCTTTTATTTAATTTAAAGTTATTTAAATAAACGTC
ACTCACTTGTGGCTAGTGGCTACCATATTGGACAGTGCATTTCTGGAGGCTTGTGCAATG
GAAACTTGCATCCAAGTGATAGTGGAGTAAATGGAGTGAGGTGAAAAGACAGTTTGTGGT
TTAGTAACATGCAGTTGGCTTAAAAAAACTTTTTTTTTTCCTTTCTGGGCTTACAAAAAT
ATATGATCTTTTAAAAATATATATGTATATATATGATCTCAAGTATGACCGTAAAAATGC
ATTAATTGCCCTTAGGGGTTATTACTTACATACTGCAGGCCGAGGAATGATCAGTGAAGC
TTAAAGAGTGCTTGATAAAGCCCTTCTTCTGGGATCATTAGCTGCATGTGAATCTGTTGT
CCTGAAACAGTAGTTAGACAGTAGCTGTAAAATGTTTGACTTGCATGACCTGTACTGTGA
AATTGTGTTTAGGGTCTTGTGACCAAAAAGTAACCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAATTTTGCACATGACTTTAAAGTGGGTCCCTTGAAGGTGAAACCGTGTCTTGGTGCAGC
CCTTGGGATCTT------------------------------------------------
------------------------------------------------TGAAATGGGGTT
AGTCTGAGTATGAACTGGATTTTGTCTTTTATTTAATTTAAAGTTATTTAAATAAACGTC
ACTCACTTGTGGCTAGTGGCTACCATATTGGACAGTGCATTTCTGGAGGCTTGTGCAATG
GAAACTTGCATCCAAGTGATAGTGGAGTAAATGGAGTGAGGTGAAAAGACAGTTTGTGGT
TTAGTAACATGCAGTTGGCTTAAAAAAACTTTTTTTTTTCCTTTCTGGGCTTACAAAAAT
ATATGATCTTTTAAAAATATATATGTATATATATGATCTCAAGTATGACCGTAAAAATGC
ATTAATTGCCCTTAGGGGTTATTACTTACATACTGCAGGCCGAGGAATGATCAGTGAAGC
TTAAAGAGTGCTTGATAAAGCCCTTCTTCTGGGATCATTAGCTGCATGTGAATCTGTTGT
CCTGAAACAGTAGTTAGACAGTAGCTGTAAAATGTTTGACTTGCATGACCTGTACTGTGA
AATTGTGTTTAGGGTCTTGTGACCAAAAAGTAACCG

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               73-333, gnl|bosTau2|chr24 (44581665-44581423)
               

               
               73-333, gnl|Hg17|chr18 (57630465-57630213)
               


               
               353-597, gnl|bosTau2|chr24 (44581433-44581184)
               

               
               353-597, gnl|Hg17|chr18 (57630224-57629971)
               

               
               353-597, gnl|Mm7|chr1 (105179691-105179435)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               73-333, gnl|bosTau2|chr24 (44581665-44581423)
               

               
               73-333, gnl|Hg17|chr18 (57630465-57630213)
               


               
               353-597, gnl|bosTau2|chr24 (44581433-44581184)
               

               
               353-597, gnl|Hg17|chr18 (57630224-57629971)
               

               
               353-597, gnl|Mm7|chr1 (105179691-105179435)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               fat (0.147427)
               

               
               ssp (0.13552)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)
               

               
               ssp (0.13552)

	73-333, gnl\|bosTau2\|chr24 (44581665-44581423)
	73-333, gnl\|Hg17\|chr18 (57630465-57630213)

	353-597, gnl\|bosTau2\|chr24 (44581433-44581184)
	353-597, gnl\|Hg17\|chr18 (57630224-57629971)
	353-597, gnl\|Mm7\|chr1 (105179691-105179435)