Non-Coding RNA Search

Ss1.1-rssp10_e4.5

Sequence:


               
               TCCCAACCAGTAACTCCAGTTTCTCCAGTCTGGTCGCCAGGAGTGGCTCCAACCCAACCT
GCTGCCTTTCCCACATCCAGTCCATCACAGGGCACCGTTGTCTCCTCCATCAAAATAGCC
CAGCCTTCTTATCCTCCTGCCCGGCCTGCAAGTGCTTTGAACCTGGCTGGTCCCTTCAAA
GGACCACAAGCATCAGTAGCCACTCTGAACTACACTCCCAAGCCAGCAGCTCCCACACCA
ACAGTAAATGCTGCTCATGCTGGTGCAGTGGGACCATCCAATGAGCTTCCCGGAATGAGC
GGGAAAGGAGCCCAGCTCTTTGCTAAAAGGCAGTCTAGGATGGAGAAGTATGTGGTGGAT
TCAGACACGGTGCAAGCTCACGCTGCTCGTGCACAGTCTCCCACTCCATCTCTACCAGCT
GGCTGGAAGTACTCCTCCAACGTTCGAGCACCTCCTCCTGTGGCCTACAATCCTATCCAT
TCCCCTTCCTACCCACTGGCTGCTGTCAAGTCTCAGCCATCAGCCCCGCAGGCCTCTAAA
ACAAGCAAGAAAAAGGGCAAGAAACCCCTCAATGCTTTGGATGTAATGAAGCACCAACCG
TATCAGCTAAATGCGTCCTTGTTTACTTTCCAACCTCCAGATTCAAAGGATGGCCTCCCC
CCAAAGGCATCAGTCAAGGTCAGTTCAGTGCCAGGCATGAAGCAAGCTCTTCCTCCTCGG
CCAGTGAATGCTGGCTCGCCCACTAATGTGCAAGCCTCGTCCGTGTACTCAGTACCAGCC
TATACCTCTCCGCCTTCCTTCTTTGCTGAGGCCACCTCACCAGTCAGTGCCTCCCCAGTG
CCTGTGGCCATTCCCACCTCGCCAAAGCAAGAATCAGCCTCACCATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCAACCAGTAACTCCAGTTTCTCCAGTCTGGTCGCCAGGAGTGGCTCCAACCCAACCT
GCTGCCTTTCCCACATCCAGTCCATCACAGGGCACCGTTGTCTCCTCCATCAAAATAGCC
CAGCCTTCTTATCCTCCTGCCCGGCCTGCAAGTGCTTTGAACCTGGCTGGTCCCTTCAAA
GGACCACAAGCATCAGTAGCCACTCTGAACTACACTCCCAAGCCAGCAGCTCCCACACCA
ACAGTAAATGCTGCTCATGCTGGTGCAGTGGGACCATCCAATGAGCTTCCCGGAATGAGC
GGGAAAGGAGCCCAGCTCTTTGCTAAAAGGCAGTCTAGGATGGAGAAGTATGTGGTGGAT
TCAGACACGGTGCAAGCTCACGCTGCTCGTGCACAGTCTCCCACTCCATCTCTACCAGCT
GGCTGGAAGTACTCCTCCAACGTTCGAGCACCTCCTCCTGTGGCCTACAATCCTATCCAT
TCCCCTTCCTACCCACTGGCTGCTGTCAAGTCTCAGCCATCAGCCCCGCAGGCCTCTAAA
ACAAGCAAGAAAAAGGGCAAGAAACCCCTCAATGCTTTGGATGTAATGAAGCACCAACCG
TATCAGCTAAATGCGTCCTTGTTTACTTTCCAACCTCCAGATTCAAAGGATGGCCTCCCC
CCAAAGGCATCAGTCAAGGTCAGTTCAGTGCCAGGCATGAAGCAAGCTCTTCCTCCTCGG
CCAGTGAATGCTGGCTCGCCCACTAATGTGCAAGCCTCGTCCGTGTACTCAGTACCAGCC
TATACCTCTCCGCCTTCCTTCTTTGCTGAGGCCACCTCACCAGTCAGTGCCTCCCCAGTG
CCTGTGGCCATTCCCACCTCGCCAAAGCAAGAATCAGCCTCACCATCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26347853|dbj|BAC37575.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26347853|dbj|BAC37575.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               231-350, - strand, RNAz p=0.797431
               

               
               471-590, - strand, RNAz p=0.584692

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               231-350, - strand, RNAz p=0.797431
               

               
               471-590, - strand, RNAz p=0.584692

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-888, gnl|bosTau2|chr6 (2812808-2813695)
               

               
               1-888, gnl|Hg17|chr4 (120309841-120310728)
               

               
               1-888, gnl|Mm7|chr3 (122952017-122951118)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-888, gnl|bosTau2|chr6 (2812808-2813695)
               

               
               1-888, gnl|Hg17|chr4 (120309841-120310728)
               

               
               1-888, gnl|Mm7|chr3 (122952017-122951118)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ldo (0.485013)
               

               
               ssp (0.406559)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               ste (0.135208)
               

               
               ese (0.126502)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.485013)
               

               
               ssp (0.406559)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               ste (0.135208)
               

               
               ese (0.126502)

	231-350, - strand, RNAz p=0.797431
	471-590, - strand, RNAz p=0.584692

	1-888, gnl\|bosTau2\|chr6 (2812808-2813695)
	1-888, gnl\|Hg17\|chr4 (120309841-120310728)
	1-888, gnl\|Mm7\|chr3 (122952017-122951118)

	ldo (0.485013)
	ssp (0.406559)
	nms (0.213858)
	mas (0.210305)
	ste (0.135208)
	ese (0.126502)