Ss1.1-rssp10_k23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGCATCTCAGGAAGCAGCACCGGATGCTAGCCGATCTTCACTACAGCAAAGCTGTGAAG CTTTTTCAGCTTCTGAAAGACGCTCCGTGTGAACTGCTTAGAGTACAGTTAGAAAGAGTA GCGTTCGCAGAATTTCAGATGACCAGTCAGAATAGCAACGTCGGAAAATTAAAAACACTC TCTGGGGCTCTTGACATAATGGTGAGAACTAAGCATGCATTCCAGCTCATCAGAAAGGAG CTTCTAGAGGAATTTGACCAGCCTAAGAGCGAAGAGACCCCTCCAGCTGCTGAGTCTCCT CCTGGTCTTAATCGAGAAGAAGTCCTGAAGCTCCTGAGTATATTCGAGTCCCGCCTGTCA TTCCTCCTCCTCCAGTCCGTCAAGCTGCTCTCTTCAACCAAGAAGAAAACAAGTAGTAAC CTTGAAGAAGACGTAGTCCTCAAAACCAACAAGCAGATTTACTCCCAGCTTCTGAGAGCT ACTGCTAACAAAAACGCATCTCTCCTGGAAAGAATCGACCTTCTCCTCCATCTGCTGGAG CAGCTGGCGCACGGCGCCCCGGCGGTGCTGTGCAGTGACGCGGGGCGGGGGCCGGTCTGC AGAGATGCTGTCCGTGCTTCTGCAGCCGGGGGCCGGTTTGTCCATTCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGCATCTCAGGAAGCAGCACCGGATGCTAGCCGATCTTCACTACAGCAAAGCTGTGAAG CTTTTTCAGCTTCTGAAAGACGCTCCGTGTGAACTGCTTAGAGTACAGTTAGAAAGAGTA GCGTTCGCAGAATTTCAGATGACCAGTCAGAATAGCAACGTCGGAAAATTAAAAACACTC TCTGGGGCTCTTGACATAATGGTGAGAACTAAGCATGCATTCCAGCTCATCAGAAAGGAG CTTCTAGAGGAATTTGACCAGCCTAAGAGCGAAGAGACCCCTCCAGCTGCTGAGTCTCCT CCTGGTCTTAATCGAGAAGAAGTCCTGAAGCTCCTGAGTATATTCGAGTCCCGCCTGTCA TTCCTCCTCCTCCAGTCCGTCAAGCTGCTCTCTTCAACCAAGAAGAAAACAAGTAGTAAC CTTGAAGAAGACGTAGTCCTCAAAACCAACAAGCAGATTTACTCCCAGCTTCTGAGAGCT ACTGCTAACAAAAACGCATCTCTCCTGGAAAGAATCGACCTTCTCCTCCATCTGCTGGAG CAGCTGGCGCACGGCGCCCCGGCGGTGCTGTGCAGTGACGCGGGGCGGGGGCCGGTCTGC AGAGATGCTGTCCGTGCTTCTGCAGCCGGGGGCCGGTTTGTCCATTCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | More info |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
| 1-119, - strand, RNAz p=0.741952 | |
| 1-102, - strand, RNAz p=0.61089 | |
| 412-530, - strand, RNAz p=0.718553 | |
| 436-549, - strand, RNAz p=0.523294 |
| Predicted RNA structure(s): 4 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-119, - strand, RNAz p=0.741952 | |
| 1-102, - strand, RNAz p=0.61089 | |
| 412-530, - strand, RNAz p=0.718553 | |
| 436-549, - strand, RNAz p=0.523294 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 1-150, gnl|bosTau2|chr26 (33367357-33367208) | |
| 1-150, gnl|canFam2|chr28 (37920417-37920603) | |
| 1-150, gnl|danRer3|chr17 (5323735-5323571) | |
| 1-150, gnl|echTel1|scaffold_317605 (80347-80531) | |
| 1-150, gnl|fr1|chrUn (60920591-60920426) | |
| 1-150, gnl|galGal2|chrUn (136750164-136750342) | |
| 1-150, gnl|hg17|chr10 (127427965-127428150) | |
| 1-150, gnl|Hg17|chr10 (127427980-127428129) | |
| 1-150, gnl|loxAfr1|scaffold_11711 (73032-72848) | |
| 1-150, gnl|mm7|chr7 (130068249-130068427) | |
| 1-150, gnl|Mm7|chr7 (130068264-130068413) | |
| 1-150, gnl|monDom2|scaffold_144 (890094-890261) | |
| 1-150, gnl|oryCun1|scaffold_181793 (7723-7538) | |
| 1-150, gnl|panTro1|chr8 (129947928-129948115) | |
| 1-150, gnl|rheMac2|chr9 (125330657-125330842) | |
| 1-150, gnl|rn3|chr1 (193312334-193312512) | |
| 1-150, gnl|tetNig1|chr17 (7436324-7436155) | |
| 1-150, gnl|xenTro1|scaffold_47 (3041559-3041373) | |
| 412-648, gnl|bosTau2|chr26 (33363006-33362766) | |
| 412-648, gnl|canFam2|chr28 (37933641-37933932) | |
| 412-648, gnl|echTel1|scaffold_282900 (32646-32921) | |
| 412-648, gnl|galGal2|chrUn (136754463-136754746) | |
| 412-648, gnl|hg17|chr10 (127441822-127442112) | |
| 412-648, gnl|Hg17|chr10 (127441858-127442096) | |
| 412-648, gnl|loxAfr1|scaffold_98420 (4217-3914) | |
| 412-648, gnl|mm7|chr7 (130076229-130076518) | |
| 412-648, gnl|Mm7|chr7 (130076258-130076502) | |
| 412-648, gnl|monDom2|scaffold_144 (896426-896734) | |
| 412-648, gnl|panTro1|chr8 (129961816-129962106) | |
| 412-648, gnl|rheMac2|chr9 (125344237-125344527) | |
| 412-648, gnl|rn3|chr1 (193320169-193320450) | |
| 412-648, gnl|xenTro1|scaffold_47 (3033462-3033191) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-150, gnl|bosTau2|chr26 (33367357-33367208) | |
| 1-150, gnl|canFam2|chr28 (37920417-37920603) | |
| 1-150, gnl|danRer3|chr17 (5323735-5323571) | |
| 1-150, gnl|echTel1|scaffold_317605 (80347-80531) | |
| 1-150, gnl|fr1|chrUn (60920591-60920426) | |
| 1-150, gnl|galGal2|chrUn (136750164-136750342) | |
| 1-150, gnl|hg17|chr10 (127427965-127428150) | |
| 1-150, gnl|Hg17|chr10 (127427980-127428129) | |
| 1-150, gnl|loxAfr1|scaffold_11711 (73032-72848) | |
| 1-150, gnl|mm7|chr7 (130068249-130068427) | |
| 1-150, gnl|Mm7|chr7 (130068264-130068413) | |
| 1-150, gnl|monDom2|scaffold_144 (890094-890261) | |
| 1-150, gnl|oryCun1|scaffold_181793 (7723-7538) | |
| 1-150, gnl|panTro1|chr8 (129947928-129948115) | |
| 1-150, gnl|rheMac2|chr9 (125330657-125330842) | |
| 1-150, gnl|rn3|chr1 (193312334-193312512) | |
| 1-150, gnl|tetNig1|chr17 (7436324-7436155) | |
| 1-150, gnl|xenTro1|scaffold_47 (3041559-3041373) | |
| 412-648, gnl|bosTau2|chr26 (33363006-33362766) | |
| 412-648, gnl|canFam2|chr28 (37933641-37933932) | |
| 412-648, gnl|echTel1|scaffold_282900 (32646-32921) | |
| 412-648, gnl|galGal2|chrUn (136754463-136754746) | |
| 412-648, gnl|hg17|chr10 (127441822-127442112) | |
| 412-648, gnl|Hg17|chr10 (127441858-127442096) | |
| 412-648, gnl|loxAfr1|scaffold_98420 (4217-3914) | |
| 412-648, gnl|mm7|chr7 (130076229-130076518) | |
| 412-648, gnl|Mm7|chr7 (130076258-130076502) | |
| 412-648, gnl|monDom2|scaffold_144 (896426-896734) | |
| 412-648, gnl|panTro1|chr8 (129961816-129962106) | |
| 412-648, gnl|rheMac2|chr9 (125344237-125344527) | |
| 412-648, gnl|rn3|chr1 (193320169-193320450) | |
| 412-648, gnl|xenTro1|scaffold_47 (3033462-3033191) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.197785) | |
| spl (0.143184) | |
| ssp (0.13552) |