Non-Coding RNA Search

Ss1.1-rssp11_c23.5

Sequence:


               
               AAGAGGAAAAAAAAATTATACTAATTGCTTCCTTTTCAATGTAGTGCTTGACTTGAGACA
TGAAAGTTAGCATTTTTTATAACTATTACTACTGTTGACATCAAAAGAAGAGCTATTATG
TCTTTCAGAAGAGGGAACACATTTGAATTTGTTGGAAACTTTTCAGATCTCCAGGGGTCT
ATGTTTCAAATCAGTCTCATGCTTTTCTGGGTTGCTGATCAGACCCTTTTCTTAACAGAA
AGACATTTACCACAGTCACTGAAGTTACACTAAGTAGAACCCATAGCCCTCAGAAGCTAA
TCTTGACATCCTCTCATGCTGTGACTATTTGGTTCAGTTTCCATTTTACTGAAAAGGTGT
GGAACTTCTTTTTGTAAAAAATCAGCCAGTTACATCTCCTTTCATTGCATAATTTTTAAG
CCCTGCTCCCCACTGCTCACATTATATGCTCAGTCTAACAAGAGAAAAACTGTACTCTGT
AACCATTCACATCCCAAATCAGAATCCCTACCGTTGGTTGACAGTCATCTCCAACCAATA
GGCAACCTTCAGCCTTTCTCTTATCACCAAGCACTTTTCTGCTCTGGGAGTTCACAAGGT
GTTTCATACATCTTGCCTGGAAATAGGAACCTTGTGACTCTGTAGCCTGAAACTGAAGCC
CCTCTGACCATGTGGCCATGTGCAGAAGCCAGCAGAGGGAGCCGAGAACTCAAAACATAA
CAATAATGAAACAAAAGCAAAATAAAAAGCAGCTTTCCTTTCAATGCATGTACCAAGCTG
TGTATGACAATATATCCCACTTGCTGGTCTTAGCAAAAAGTTTTACATTCTTTCCATGGA
TCAATTAGAACCACAGCCCGTCCAATTTCAACGTACCTTTTCATTCTTCTGTATTCTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAGGAAAAAAAAATTATACTAATTGCTTCCTTTTCAATGTAGTGCTTGACTTGAGACA
TGAAAGTTAGCATTTTTTATAACTATTACTACTGTTGACATCAAAAGAAGAGCTATTATG
TCTTTCAGAAGAGGGAACACATTTGAATTTGTTGGAAACTTTTCAGATCTCCAGGGGTCT
ATGTTTCAAATCAGTCTCATGCTTTTCTGGGTTGCTGATCAGACCCTTTTCTTAACAGAA
AGACATTTACCACAGTCACTGAAGTTACACTAAGTAGAACCCATAGCCCTCAGAAGCTAA
TCTTGACATCCTCTCATGCTGTGACTATTTGGTTCAGTTTCCATTTTACTGAAAAGGTGT
GGAACTTCTTTTTGTAAAAAATCAGCCAGTTACATCTCCTTTCATTGCATAATTTTTAAG
CCCTGCTCCCCACTGCTCACATTATATGCTCAGTCTAACAAGAGAAAAACTGTACTCTGT
AACCATTCACATCCCAAATCAGAATCCCTACCGTTGGTTGACAGTCATCTCCAACCAATA
GGCAACCTTCAGCCTTTCTCTTATCACCAAGCACTTTTCTGCTCTGGGAGTTCACAAGGT
GTTTCATACATCTTGCCTGGAAATAGGAACCTTGTGACTCTGTAGCCTGAAACTGAAGCC
CCTCTGACCATGTGGCCATGTGCAGAAGCCAGCAGAGGGAGCCGAGAACTCAAAACATAA
CAATAATGAAACAAAAGCAAAATAAAAAGCAGCTTTCCTTTCAATGCATGTACCAAGCTG
TGTATGACAATATATCCCACTTGCTGGTCTTAGCAAAAAGTTTTACATTCTTTCCATGGA
TCAATTAGAACCACAGCCCGTCCAATTTCAACGTACCTTTTCATTCTTCTGTATTCTCTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               684-783, - strand, RNAz p=0.80311

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               684-783, - strand, RNAz p=0.80311

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-900, gnl|bosTau2|chr24 (18577914-18578842)
               

               
               1-900, gnl|Hg17|chr18 (30700201-30701151)
               

               
               1-900, gnl|Mm7|chr18 (24018003-24018912)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-900, gnl|bosTau2|chr24 (18577914-18578842)
               

               
               1-900, gnl|Hg17|chr18 (30700201-30701151)
               

               
               1-900, gnl|Mm7|chr18 (24018003-24018912)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               bfe (0.449573)
               

               
               ssp (0.406559)
               

               
               hea (0.204499)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.449573)
               

               
               ssp (0.406559)
               

               
               hea (0.204499)
               

               
               ldo (0.0970026)

	1-900, gnl\|bosTau2\|chr24 (18577914-18578842)
	1-900, gnl\|Hg17\|chr18 (30700201-30701151)
	1-900, gnl\|Mm7\|chr18 (24018003-24018912)