Non-Coding RNA Search

Ss1.1-rssp12_b16.5

Sequence:


               
               AGGGGCGTGGCACCCTCGGTGGAGGCCTTTGATAAGCTGATGAACGGCATGGTGGCTGAG
TTTTTAAAGAAGAGTAGGATCCTGGCTGGTGACGTAGAGACACATGCAGAGATGGTGCAT
AGCGCTTTCCAGGCCCAGAGAGCTTTCCTTCTGATGGCCTCTCAGTACCAACAACCCCAA
GAGAACGACGTGGCTGCGCTCCTGAAACCAATATCAGAAAAGATCCAGGAGATCCAAACT
TTTAGAGAGAGAAACCGGGGGAGTAAAATGTTCAATCATCTCTCCGCCGTCAGCGAAAGC
ATCCCTGCCCTCGGGTGGATAGCCGTGTCCCCCAAACCTGGTCCTTATGTCAAGGAGATG
AATGACGCTGCCACCTTTTATACTAACAGGGTCTTGAAGGACTACAAACACAGTGATTTA
CGCCATGTGGATTGGGTGAAGTCATATTTGAACATTTGGAGTGAGCTTCAAGCATACATC
AAGGAACACCACACCACAGGTCTTACTTGGAGCAAAACAGAAGGCATCCCATGGAAACGC
TTCCATTAGAAACGGATGTTACCTTTCAGTTGTCACAATGGATGGTCTCTCTGGAGTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGGCGTGGCACCCTCGGTGGAGGCCTTTGATAAGCTGATGAACGGCATGGTGGCTGAG
TTTTTAAAGAAGAGTAGGATCCTGGCTGGTGACGTAGAGACACATGCAGAGATGGTGCAT
AGCGCTTTCCAGGCCCAGAGAGCTTTCCTTCTGATGGCCTCTCAGTACCAACAACCCCAA
GAGAACGACGTGGCTGCGCTCCTGAAACCAATATCAGAAAAGATCCAGGAGATCCAAACT
TTTAGAGAGAGAAACCGGGGGAGTAAAATGTTCAATCATCTCTCCGCCGTCAGCGAAAGC
ATCCCTGCCCTCGGGTGGATAGCCGTGTCCCCCAAACCTGGTCCTTATGTCAAGGAGATG
AATGACGCTGCCACCTTTTATACTAACAGGGTCTTGAAGGACTACAAACACAGTGATTTA
CGCCATGTGGATTGGGTGAAGTCATATTTGAACATTTGGAGTGAGCTTCAAGCATACATC
AAGGAACACCACACCACAGGTCTTACTTGGAGCAAAACAGAAGGCATCCCATGGAAACGC
TTCCATTAGAAACGGATGTTACCTTTCAGTTGTCACAATGGATGGTCTCTCTGGAGTAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55859735|emb|CAI11019.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55859735|emb|CAI11019.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               19-518, gnl|bosTau2|chr12 (5946015-5945516)
               

               
               19-518, gnl|Hg17|chr3 (76565968-76566465)
               

               
               19-518, gnl|Mm7|chr4 (122316129-122309817)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-518, gnl|bosTau2|chr12 (5946015-5945516)
               

               
               19-518, gnl|Hg17|chr3 (76565968-76566465)
               

               
               19-518, gnl|Mm7|chr4 (122316129-122309817)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mas (0.210305)
               

               
               ssp (0.13552)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               ssp (0.13552)

	19-518, gnl\|bosTau2\|chr12 (5946015-5945516)
	19-518, gnl\|Hg17\|chr3 (76565968-76566465)
	19-518, gnl\|Mm7\|chr4 (122316129-122309817)