Non-Coding RNA Search

Ss1.1-rssp12_e23.5

Sequence:


               
               GTTTTTTTGTTTGTTTTATTTTGAAAGGTCTGAAAGGGTGACGTCCCCCACCTAATGGCA
ATATGAAACCCTTTGTGCTTCTCTCCAGCCCCTTCCCCGGCCCACCTTGCTCCAGTTCCC
TCCCTCCCAAGCCTCCTTCCCTGCTGCCTTTACCCACTTTGTGTGTGTGAGCTCTGCATT
CAGGCAGCTGCAACATTCCAGTGTTTGAACTGTCACCAATTCTTGCACCTCAAGCTAACC
GGCTTCACCGTCTCGCTCCTGTAGTGCCCACGTCCCATCTGCAGCCCCATTTCTGCATGA
GAATTTGGTGTTTGGAATGTTTTCTGACTCCTGGGGCGGGGTTCCTCGCCTTATCATCCT
CAGTGTGGAGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTTTTGTTTGTTTTATTTTGAAAGGTCTGAAAGGGTGACGTCCCCCACCTAATGGCA
ATATGAAACCCTTTGTGCTTCTCTCCAGCCCCTTCCCCGGCCCACCTTGCTCCAGTTCCC
TCCCTCCCAAGCCTCCTTCCCTGCTGCCTTTACCCACTTTGTGTGTGTGAGCTCTGCATT
CAGGCAGCTGCAACATTCCAGTGTTTGAACTGTCACCAATTCTTGCACCTCAAGCTAACC
GGCTTCACCGTCTCGCTCCTGTAGTGCCCACGTCCCATCTGCAGCCCCATTTCTGCATGA
GAATTTGGTGTTTGGAATGTTTTCTGACTCCTGGGGCGGGGTTCCTCGCCTTATCATCCT
CAGTGTGGAGTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               3-115, - strand, RNAz p=0.689322

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-115, - strand, RNAz p=0.689322

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               3-372, gnl|bosTau2|chr16 (46287070-46287445)
               

               
               3-372, gnl|canFam2|chr7 (19873078-19873482)
               

               
               3-372, gnl|dasNov1|scaffold_505 (161377-161002)
               

               
               3-372, gnl|echTel1|scaffold_312347 (4612-4275)
               

               
               3-372, gnl|galGal2|chr8 (7612554-7612855)
               

               
               3-372, gnl|hg17|chr1 (180254452-180254811)
               

               
               3-372, gnl|Hg17|chr1 (180254458-180254817)
               

               
               3-372, gnl|loxAfr1|scaffold_5713 (69849-69467)
               

               
               3-372, gnl|mm7|chr1 (152798666-152798246)
               

               
               3-372, gnl|Mm7|chr1 (152798640-152798238)
               

               
               3-372, gnl|monDom2|scaffold_16 (37516184-37516542)
               

               
               3-372, gnl|oryCun1|scaffold_183328 (833-604)
               

               
               3-372, gnl|panTro1|chr1 (162818022-162818386)
               

               
               3-372, gnl|rheMac2|chr1 (187096467-187096103)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-372, gnl|bosTau2|chr16 (46287070-46287445)
               

               
               3-372, gnl|canFam2|chr7 (19873078-19873482)
               

               
               3-372, gnl|dasNov1|scaffold_505 (161377-161002)
               

               
               3-372, gnl|echTel1|scaffold_312347 (4612-4275)
               

               
               3-372, gnl|galGal2|chr8 (7612554-7612855)
               

               
               3-372, gnl|hg17|chr1 (180254452-180254811)
               

               
               3-372, gnl|Hg17|chr1 (180254458-180254817)
               

               
               3-372, gnl|loxAfr1|scaffold_5713 (69849-69467)
               

               
               3-372, gnl|mm7|chr1 (152798666-152798246)
               

               
               3-372, gnl|Mm7|chr1 (152798640-152798238)
               

               
               3-372, gnl|monDom2|scaffold_16 (37516184-37516542)
               

               
               3-372, gnl|oryCun1|scaffold_183328 (833-604)
               

               
               3-372, gnl|panTro1|chr1 (162818022-162818386)
               

               
               3-372, gnl|rheMac2|chr1 (187096467-187096103)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               col (0.195008)
               

               
               fty (0.17584)
               

               
               nco (0.161734)
               

               
               ssp (0.13552)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               fty (0.17584)
               

               
               nco (0.161734)
               

               
               ssp (0.13552)

	3-372, gnl\|bosTau2\|chr16 (46287070-46287445)
	3-372, gnl\|canFam2\|chr7 (19873078-19873482)
	3-372, gnl\|dasNov1\|scaffold_505 (161377-161002)
	3-372, gnl\|echTel1\|scaffold_312347 (4612-4275)
	3-372, gnl\|galGal2\|chr8 (7612554-7612855)
	3-372, gnl\|hg17\|chr1 (180254452-180254811)
	3-372, gnl\|Hg17\|chr1 (180254458-180254817)
	3-372, gnl\|loxAfr1\|scaffold_5713 (69849-69467)
	3-372, gnl\|mm7\|chr1 (152798666-152798246)
	3-372, gnl\|Mm7\|chr1 (152798640-152798238)
	3-372, gnl\|monDom2\|scaffold_16 (37516184-37516542)
	3-372, gnl\|oryCun1\|scaffold_183328 (833-604)
	3-372, gnl\|panTro1\|chr1 (162818022-162818386)
	3-372, gnl\|rheMac2\|chr1 (187096467-187096103)