Non-Coding RNA Search

Ss1.1-rssp12_f24.5

Sequence:


               
               ACTTAATTTCAGATGTCACCTCCCAATCTGGGTCCAAGAAGCAGAATATTTTTACTGAGT
CAAAAAATCTAACTCAGATTGACTTAACATATTTATTTTCTTTGCACACTTAAAAATCCG
GGAGCACCCCCAAATAGACATGGGCCATTGTATTAAGTAAGCAGGATACTTAGGGTTTAT
GCTTTAGCCACAAGAAAGGCAGTGATCAGTGTTATCAACATTAGGACATAGTCTTTACAT
AACATAACAGCTGTGTTCCCGCGGTGAAAAAGGTTCAAATGTAGTGAAAATATAACACAT
ATTGACTGATATTTCCTTTTTAGGTAGTGCTTTATATATATTTCTAATGTTAAGGGATAA
GAAATTTATCAAGGACAGGGATCAGTTCTGGTCTGTCAACCTCAGCCACTTGTTTGATGT
AGAAGAGAAGGTACTTTGGGGATTGTTGGAATGTACATAGTTTAGTAAGCTAGGTAAGAA
AGAGGGAAGTAACAATTACGGAGCACTTATTGTGTACCAGGCTCCTTGCCAGATGTTTTA
CATATATAAGCTCATTTTAGAAGACTTAAATAAGGTGGGTGGGGCAGAGAAATTATCCTT
AGAGATTGAGTACCATCCTCTCTCCCCATTTACTAAAGAAACTAAGTGACAACATCTCCA
GTTGCCCATGAAAACCTAAGTTTGTTTTCCTCAGCTGAGGCAAGTGGTAGAGTATAATGG
AGTAATGTAAAAAAAGGTGAACAGGCTGCAGATAAAGGTACAAGTAACTATTCTTTTCCC
TTGGGAAACCACATGATTTGGGTGTGAAGGGCTACTGACTCCAGAGGCTGATTGCAAAGC
ATAAGGAACCCCGGATGAGTGGAGACTGTAGGGTGAGGACACCATTATTAGCATCATTTC
TGAGTGACCTCACAGATTTTTTTCTTGTGTTTGTTTTGCTTTCTGAAAACTGCTCCTGCT
GTTCCTTGCAATTCTATTCTCACACCTTCACTTTATTATTTATATTTGATGGACCAGAAG
GATTCAGGCAAGGTTACCTTGTAAATTTGGATTGGTTACACACCATGCAGTCATCCAGCT
GGCTCTGAAGTTAATAATGTTACTGACAGTAAACCTGAAGACCTTTATCATATCTATTTT
AAGTCCAGGTCTGACCAACCATGGAAAATATTCAACATGAATTAATGTAGAGAACCACAA
AGCATTTTTGACAGCTCCAAGGAAAACCATCTACTTGATTCAAGAGATAAACCTAGAGAC
CTCTCATAAAAGCTTGCCTGGTGTGAGGGTACATGGTACCATTTTCATCCTCTGAAAATA
TCTGTATTCCTGTTCTTTTTCTGCTGTCACTGTCAATCTGCTATATTTTTCACTATCCTA
TTAAAATATTATTTTCTTCTTTATCTGTTTAATGTACATATTAAAAAAAAAACTTCCCTG
TAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTAATTTCAGATGTCACCTCCCAATCTGGGTCCAAGAAGCAGAATATTTTTACTGAGT
CAAAAAATCTAACTCAGATTGACTTAACATATTTATTTTCTTTGCACACTTAAAAATCCG
GGAGCACCCCCAAATAGACATGGGCCATTGTATTAAGTAAGCAGGATACTTAGGGTTTAT
GCTTTAGCCACAAGAAAGGCAGTGATCAGTGTTATCAACATTAGGACATAGTCTTTACAT
AACATAACAGCTGTGTTCCCGCGGTGAAAAAGGTTCAAATGTAGTGAAAATATAACACAT
ATTGACTGATATTTCCTTTTTAGGTAGTGCTTTATATATATTTCTAATGTTAAGGGATAA
GAAATTTATCAAGGACAGGGATCAGTTCTGGTCTGTCAACCTCAGCCACTTGTTTGATGT
AGAAGAGAAGGTACTTTGGGGATTGTTGGAATGTACATAGTTTAGTAAGCTAGGTAAGAA
AGAGGGAAGTAACAATTACGGAGCACTTATTGTGTACCAGGCTCCTTGCCAGATGTTTTA
CATATATAAGCTCATTTTAGAAGACTTAAATAAGGTGGGTGGGGCAGAGAAATTATCCTT
AGAGATTGAGTACCATCCTCTCTCCCCATTTACTAAAGAAACTAAGTGACAACATCTCCA
GTTGCCCATGAAAACCTAAGTTTGTTTTCCTCAGCTGAGGCAAGTGGTAGAGTATAATGG
AGTAATGTAAAAAAAGGTGAACAGGCTGCAGATAAAGGTACAAGTAACTATTCTTTTCCC
TTGGGAAACCACATGATTTGGGTGTGAAGGGCTACTGACTCCAGAGGCTGATTGCAAAGC
ATAAGGAACCCCGGATGAGTGGAGACTGTAGGGTGAGGACACCATTATTAGCATCATTTC
TGAGTGACCTCACAGATTTTTTTCTTGTGTTTGTTTTGCTTTCTGAAAACTGCTCCTGCT
GTTCCTTGCAATTCTATTCTCACACCTTCACTTTATTATTTATATTTGATGGACCAGAAG
GATTCAGGCAAGGTTACCTTGTAAATTTGGATTGGTTACACACCATGCAGTCATCCAGCT
GGCTCTGAAGTTAATAATGTTACTGACAGTAAACCTGAAGACCTTTATCATATCTATTTT
AAGTCCAGGTCTGACCAACCATGGAAAATATTCAACATGAATTAATGTAGAGAACCACAA
AGCATTTTTGACAGCTCCAAGGAAAACCATCTACTTGATTCAAGAGATAAACCTAGAGAC
CTCTCATAAAAGCTTGCCTGGTGTGAGGGTACATGGTACCATTTTCATCCTCTGAAAATA
TCTGTATTCCTGTTCTTTTTCTGCTGTCACTGTCAATCTGCTATATTTTTCACTATCCTA
TTAAAATATTATTTTCTTCTTTATCTGTTTAATGTACATATTAAAAAAAAAACTTCCCTG
TAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               147-264, - strand, RNAz p=0.961406

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               147-264, - strand, RNAz p=0.961406

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1430, gnl|bosTau2|chr6 (2813877-2815332)
               

               
               1-1430, gnl|Hg17|chr4 (120310910-120312521)
               

               
               1-1430, gnl|Mm7|chr3 (122950941-122949564)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1430, gnl|bosTau2|chr6 (2813877-2815332)
               

               
               1-1430, gnl|Hg17|chr4 (120310910-120312521)
               

               
               1-1430, gnl|Mm7|chr3 (122950941-122949564)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               isp (3.60902)
               

               
               vin (2.99302)
               

               
               tbr (1.3876)
               

               
               bfe (1.34872)
               

               
               ssp (1.08416)
               

               
               sme (0.91631)
               

               
               ldo (0.873024)
               

               
               ste (0.811249)
               

               
               nms (0.427716)
               

               
               hea (0.408998)
               

               
               aor (0.390549)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               ctl (0.153069)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               ret (0.128733)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (3.60902)
               

               
               vin (2.99302)
               

               
               tbr (1.3876)
               

               
               bfe (1.34872)
               

               
               ssp (1.08416)
               

               
               sme (0.91631)
               

               
               ldo (0.873024)
               

               
               ste (0.811249)
               

               
               nms (0.427716)
               

               
               hea (0.408998)
               

               
               aor (0.390549)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               ctl (0.153069)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               ret (0.128733)

	1-1430, gnl\|bosTau2\|chr6 (2813877-2815332)
	1-1430, gnl\|Hg17\|chr4 (120310910-120312521)
	1-1430, gnl\|Mm7\|chr3 (122950941-122949564)

	isp (3.60902)
	vin (2.99302)
	tbr (1.3876)
	bfe (1.34872)
	ssp (1.08416)
	sme (0.91631)
	ldo (0.873024)
	ste (0.811249)
	nms (0.427716)
	hea (0.408998)
	aor (0.390549)
	nep (0.183925)
	gul (0.177588)
	ton (0.1755)
	ctl (0.153069)
	ski (0.146735)
	lin (0.145603)
	nca (0.136874)
	ret (0.128733)