Non-Coding RNA Search

Ss1.1-rssp12_i7.5

Sequence:


               
               ATTCAGCATTACTTAATAGCGGAATGATATTCAGGAAAACATCCATTGGAATTTTCATTC
AGATGCTCTGTGTACTTGTAAAACTTTGCATTCGTTAACTTGTCTGCTCTATTTAGATTT
GTTTTGAAAGTTTGTTTAGATAAATATTTTTACAAAAAACACAGAACACTCTGTGGCAGA
GTATTATTTATTGACCGTAATTCATGAAATAATCTATTTTTACTCCTCTGAGAAATACTT
GTTTTTGATACATCTCCATTAAGTGCTTTTGTCATGCGAGGATATTTCGATGTTTTTATA
AAACTGATTGTTAAGGTAACAGGTATAGTATTTTAGGACACTTTACGGGCAGCCTTTGCT
TTTTCATGGGAACCTAGACCTGAAAAATTCCCTGGGAAGCAGAAAAAGAACCAACAGTCC
CTTCTACCTGCCATCTCTTTTGCGTAACAGCATCGCTCCTCATTTCCACCACCAGATGGT
ATTTTTCTATAAACTGAAATGTTAACTTTGCCTCTTCTGCCCCTCCCTCCCCTGCATGGA
GAGCTGTTCTGCCAAGAGCAGGCTTGGGGGTAGGAGAGGACCAAGACAGAATCCCAGAAG
ATGGGGCAGACACGTGCTTGTTTAAATCACCACAGTCCTTTAGAGTGACGAGGGGGACAA
GTGAAATGAAAGCAAGCTATTGTAAAGGCTGTCTAATGGGCAGATAGAAAAAAAAAAAAA
AAGCGAAACAGCGCACAGTAGGGACTGTGTATGGTCTGTCATATTTTTAAATATACTTGT
TTGTATTCTTTTTGCCTTATGAAAAAAACAATGTGTAATAGTTTTGAAGGGTAGAAGTTC
TACCTAGTTTTGAGTGAGTTTTCTTCAAGAGGGTGAGAGTGTTATGATGGTAAACTTGCC
AAAAAAGAGACCACTGAGATGCTGATAATTTTAGTAATCTTTTAAAAAATGTTGAGGAGG
CAAAGGTTACAAATTATGCCATACCAAAATAAATCTATAAATCTGTTTGGGGTCACTACT
TTGACTTTCGATTGATTCAGTTTGTAATAACTCTTAATGACCTCTGTTTACAATAAAGAC
TCTGTAAAATTGAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCAGCATTACTTAATAGCGGAATGATATTCAGGAAAACATCCATTGGAATTTTCATTC
AGATGCTCTGTGTACTTGTAAAACTTTGCATTCGTTAACTTGTCTGCTCTATTTAGATTT
GTTTTGAAAGTTTGTTTAGATAAATATTTTTACAAAAAACACAGAACACTCTGTGGCAGA
GTATTATTTATTGACCGTAATTCATGAAATAATCTATTTTTACTCCTCTGAGAAATACTT
GTTTTTGATACATCTCCATTAAGTGCTTTTGTCATGCGAGGATATTTCGATGTTTTTATA
AAACTGATTGTTAAGGTAACAGGTATAGTATTTTAGGACACTTTACGGGCAGCCTTTGCT
TTTTCATGGGAACCTAGACCTGAAAAATTCCCTGGGAAGCAGAAAAAGAACCAACAGTCC
CTTCTACCTGCCATCTCTTTTGCGTAACAGCATCGCTCCTCATTTCCACCACCAGATGGT
ATTTTTCTATAAACTGAAATGTTAACTTTGCCTCTTCTGCCCCTCCCTCCCCTGCATGGA
GAGCTGTTCTGCCAAGAGCAGGCTTGGGGGTAGGAGAGGACCAAGACAGAATCCCAGAAG
ATGGGGCAGACACGTGCTTGTTTAAATCACCACAGTCCTTTAGAGTGACGAGGGGGACAA
GTGAAATGAAAGCAAGCTATTGTAAAGGCTGTCTAATGGGCAGATAGAAAAAAAAAAAAA
AAGCGAAACAGCGCACAGTAGGGACTGTGTATGGTCTGTCATATTTTTAAATATACTTGT
TTGTATTCTTTTTGCCTTATGAAAAAAACAATGTGTAATAGTTTTGAAGGGTAGAAGTTC
TACCTAGTTTTGAGTGAGTTTTCTTCAAGAGGGTGAGAGTGTTATGATGGTAAACTTGCC
AAAAAAGAGACCACTGAGATGCTGATAATTTTAGTAATCTTTTAAAAAATGTTGAGGAGG
CAAAGGTTACAAATTATGCCATACCAAAATAAATCTATAAATCTGTTTGGGGTCACTACT
TTGACTTTCGATTGATTCAGTTTGTAATAACTCTTAATGACCTCTGTTTACAATAAAGAC
TCTGTAAAATTGAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               22-1092, gnl|bosTau2|chr6 (37345756-37344695)
               

               
               22-1092, gnl|Hg17|chr4 (52729216-52727800)
               

               
               22-1092, gnl|Mm7|chr5 (73008520-73007533)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-1092, gnl|bosTau2|chr6 (37345756-37344695)
               

               
               22-1092, gnl|Hg17|chr4 (52729216-52727800)
               

               
               22-1092, gnl|Mm7|chr5 (73008520-73007533)

Expressed library(ies): 20 entry(ies)

More info

Expressed library(ies): 20 entry(ies)

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               isp (0.75188)
               

               
               vin (0.665115)
               

               
               aor (0.585823)
               

               
               sag (0.36543)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               ldo (0.291008)
               

               
               ste (0.270416)
               

               
               cbe (0.239234)
               

               
               ecc (0.23007)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               pgl (0.118483)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.75188)
               

               
               vin (0.665115)
               

               
               aor (0.585823)
               

               
               sag (0.36543)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               bfe (0.299715)
               

               
               ldo (0.291008)
               

               
               ste (0.270416)
               

               
               cbe (0.239234)
               

               
               ecc (0.23007)
               

               
               spc (0.226732)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               rec (0.17307)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               pgl (0.118483)

	22-1092, gnl\|bosTau2\|chr6 (37345756-37344695)
	22-1092, gnl\|Hg17\|chr4 (52729216-52727800)
	22-1092, gnl\|Mm7\|chr5 (73008520-73007533)

	isp (0.75188)
	vin (0.665115)
	aor (0.585823)
	sag (0.36543)
	tbr (0.308356)
	sme (0.305437)
	bfe (0.299715)
	ldo (0.291008)
	ste (0.270416)
	cbe (0.239234)
	ecc (0.23007)
	spc (0.226732)
	tes (0.207814)
	hea (0.204499)
	rec (0.17307)
	fat (0.147427)
	ski (0.146735)
	spl (0.143184)
	ssp (0.13552)
	pgl (0.118483)