Non-Coding RNA Search

Ss1.1-rssp12_k9.5

Sequence:


               
               AGAATTGTGCAGCCAGGACATCTGGGTTACAGCACCGAGGCGGTCCATGGCTTCAGATAT
AAGTCCTGCTCTTCAGACTAAATAGAAAGTTCCAGGAAGGAGTGAAGGATGACACTCTCC
GTATAATAGCTGCTCAATAAACTTTTACCAGAGATGAAAAGGAATTCCATAAAGATACCA
CTAACCAAAATAATGGTGTTTGGTTTCACAGCATAAATTCTCCTTAAGGAGAAACTTACA
GATATCCCAAAATGACTGAGATTGAACAGGCAGAGGCCCAGCTCTCTGAGTTAGACCTGC
TGGCCAGTATGTTCCCTGGCGAGAATGAGCTCATAGTGAATGACCAGCTGGCTTTAGCAG
AACTGAAAGACTGTATTGAAAAGAGGACAATGGAAGGACGATCTTCAAAAGTTTACTTTA
CAATCAATATGAACCTGGATATATCTGAGGAAGCAATGGTGACATTTTCTCTGGCGTGTA
TACTTCCCTTTAAATACCCTGCAGTTCTGCCTGAAATTACTGTCAGATCAGTATTATTAA
GTAGATCCCAGCAGGCTCAGCTGAATACAGATCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAATTGTGCAGCCAGGACATCTGGGTTACAGCACCGAGGCGGTCCATGGCTTCAGATAT
AAGTCCTGCTCTTCAGACTAAATAGAAAGTTCCAGGAAGGAGTGAAGGATGACACTCTCC
GTATAATAGCTGCTCAATAAACTTTTACCAGAGATGAAAAGGAATTCCATAAAGATACCA
CTAACCAAAATAATGGTGTTTGGTTTCACAGCATAAATTCTCCTTAAGGAGAAACTTACA
GATATCCCAAAATGACTGAGATTGAACAGGCAGAGGCCCAGCTCTCTGAGTTAGACCTGC
TGGCCAGTATGTTCCCTGGCGAGAATGAGCTCATAGTGAATGACCAGCTGGCTTTAGCAG
AACTGAAAGACTGTATTGAAAAGAGGACAATGGAAGGACGATCTTCAAAAGTTTACTTTA
CAATCAATATGAACCTGGATATATCTGAGGAAGCAATGGTGACATTTTCTCTGGCGTGTA
TACTTCCCTTTAAATACCCTGCAGTTCTGCCTGAAATTACTGTCAGATCAGTATTATTAA
GTAGATCCCAGCAGGCTCAGCTGAATACAGATCTGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               230-346, - strand, RNAz p=0.505023
               

               
               265-384, - strand, RNAz p=0.70172

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               230-346, - strand, RNAz p=0.505023
               

               
               265-384, - strand, RNAz p=0.70172

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               230-460, gnl|bosTau2|chr1 (6538915-6539145)
               

               
               230-460, gnl|canFam2|chr31 (27037830-27037971)
               

               
               230-460, gnl|danRer3|chr20 (40267040-40267184)
               

               
               230-460, gnl|dasNov1|scaffold_85683 (4119-3983)
               

               
               230-460, gnl|echTel1|scaffold_178067 (10644-10785)
               

               
               230-460, gnl|fr1|chrUn (182261008-182260861)
               

               
               230-460, gnl|galGal2|chr1 (97739667-97739808)
               

               
               230-460, gnl|hg17|chr21 (29302586-29302727)
               

               
               230-460, gnl|Hg17|chr21 (29302815-29302585)
               

               
               230-460, gnl|loxAfr1|scaffold_72925 (2242-2375)
               

               
               230-460, gnl|mm7|chr16 (87479241-87479382)
               

               
               230-460, gnl|Mm7|chr16 (87479474-87479240)
               

               
               230-460, gnl|monDom2|scaffold_29 (5938622-5938481)
               

               
               230-460, gnl|oryCun1|scaffold_186795 (40764-40623)
               

               
               230-460, gnl|panTro1|chr22 (29319765-29319906)
               

               
               230-460, gnl|rheMac2|chr3 (17647448-17647307)
               

               
               230-460, gnl|rn3|chr11 (27192623-27192764)
               

               
               230-460, gnl|tetNig1|chr16 (6094035-6094182)
               

               
               230-460, gnl|xenTro1|scaffold_490 (458919-459060)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               230-460, gnl|bosTau2|chr1 (6538915-6539145)
               

               
               230-460, gnl|canFam2|chr31 (27037830-27037971)
               

               
               230-460, gnl|danRer3|chr20 (40267040-40267184)
               

               
               230-460, gnl|dasNov1|scaffold_85683 (4119-3983)
               

               
               230-460, gnl|echTel1|scaffold_178067 (10644-10785)
               

               
               230-460, gnl|fr1|chrUn (182261008-182260861)
               

               
               230-460, gnl|galGal2|chr1 (97739667-97739808)
               

               
               230-460, gnl|hg17|chr21 (29302586-29302727)
               

               
               230-460, gnl|Hg17|chr21 (29302815-29302585)
               

               
               230-460, gnl|loxAfr1|scaffold_72925 (2242-2375)
               

               
               230-460, gnl|mm7|chr16 (87479241-87479382)
               

               
               230-460, gnl|Mm7|chr16 (87479474-87479240)
               

               
               230-460, gnl|monDom2|scaffold_29 (5938622-5938481)
               

               
               230-460, gnl|oryCun1|scaffold_186795 (40764-40623)
               

               
               230-460, gnl|panTro1|chr22 (29319765-29319906)
               

               
               230-460, gnl|rheMac2|chr3 (17647448-17647307)
               

               
               230-460, gnl|rn3|chr11 (27192623-27192764)
               

               
               230-460, gnl|tetNig1|chr16 (6094035-6094182)
               

               
               230-460, gnl|xenTro1|scaffold_490 (458919-459060)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ssp (0.13552)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.13552)

	230-346, - strand, RNAz p=0.505023
	265-384, - strand, RNAz p=0.70172

	230-460, gnl\|bosTau2\|chr1 (6538915-6539145)
	230-460, gnl\|canFam2\|chr31 (27037830-27037971)
	230-460, gnl\|danRer3\|chr20 (40267040-40267184)
	230-460, gnl\|dasNov1\|scaffold_85683 (4119-3983)
	230-460, gnl\|echTel1\|scaffold_178067 (10644-10785)
	230-460, gnl\|fr1\|chrUn (182261008-182260861)
	230-460, gnl\|galGal2\|chr1 (97739667-97739808)
	230-460, gnl\|hg17\|chr21 (29302586-29302727)
	230-460, gnl\|Hg17\|chr21 (29302815-29302585)
	230-460, gnl\|loxAfr1\|scaffold_72925 (2242-2375)
	230-460, gnl\|mm7\|chr16 (87479241-87479382)
	230-460, gnl\|Mm7\|chr16 (87479474-87479240)
	230-460, gnl\|monDom2\|scaffold_29 (5938622-5938481)
	230-460, gnl\|oryCun1\|scaffold_186795 (40764-40623)
	230-460, gnl\|panTro1\|chr22 (29319765-29319906)
	230-460, gnl\|rheMac2\|chr3 (17647448-17647307)
	230-460, gnl\|rn3\|chr11 (27192623-27192764)
	230-460, gnl\|tetNig1\|chr16 (6094035-6094182)
	230-460, gnl\|xenTro1\|scaffold_490 (458919-459060)