Ss1.1-rssp13_b21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGACATAGACAGGCTTTTGCCTGGGTTGATGAGTGGTATGATATGACAATGGATGATGT TCGGGAATACGAGAAAAACATGCATGAACAAACCAACATAAAAGTTTGCAATCAGCATTC CTCCACTGTGGATCACATAGAGAGCCAGACCCAAACAAGTACATGACAATGGATGAGGTC CGAGAATTTGAACGAGCCACTCAGGAAGCCACCAACAAGAAAATTGGCGTTTTCCCACCT GCCATTTCTATCTCCAGCATCCCCCTCCTGCCTTCTTCAGTCCGCAGTGCCCCTTCTAGT GCTCCGTCCACTCCTCTCTCCACAGATGCACCAGAATTTCTATCGGTTCCCAAAGATCGG CCCCGGAAAAAGTCTGCCCCAGAAACTCTCACGCTTCCAGACCCTGAGAAAAAAGCCACC CTGAATTTACCTGGCATACATTCTTCAGATAAGCCATGTCGGCCCAAATCAGAGTAACTT CATATGAATATTTCATGGGGGTTTATATTTTTGGTTTGGGGTCTTGTTTTGTTTTTTTTT TTAAAGAATCTTCTGATATAGAAAGAGACTGCTTTGTCACTCAAACATGTTCCTTGGATC TCTCGAGTGTGCATGTGGTTTCACATAGAGTATGATTCCCTAAGTGTGCCACACAGCTTC ATTTTAGCTGTAAAATGTACGACTGGCAAAGGACAGAAGGGATCTTCTGTAGCACAGCTG GATGCCAGGGAGGAAGCCTTGTTATTGGGCATTTGATGAGGTTGGTGTGGACTCTGAGGG CCAATAAACGAAAACTTTGCACCACTGTGTTACAAGGTGTAGTAAAACGGAAGTCAGTTT CCTCCCATCCGACCTGAAATTTCCCCAAAATATTCTCAGGCGTAACATACCTAATTGTTC AATTTCGAACTGCTCATTACCAATACTTGAATATCAGTCGTTACTGAGGTTCCGGTTTTG GTTAGTCTGACTCAGGATTTGGGGCCTAATTAACTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGACATAGACAGGCTTTTGCCTGGGTTGATGAGTGGTATGATATGACAATGGATGATGT TCGGGAATACGAGAAAAACATGCATGAACAAACCAACATAAAAGTTTGCAATCAGCATTC CTCCACTGTGGATCACATAGAGAGCCAGACCCAAACAAGTACATGACAATGGATGAGGTC CGAGAATTTGAACGAGCCACTCAGGAAGCCACCAACAAGAAAATTGGCGTTTTCCCACCT GCCATTTCTATCTCCAGCATCCCCCTCCTGCCTTCTTCAGTCCGCAGTGCCCCTTCTAGT GCTCCGTCCACTCCTCTCTCCACAGATGCACCAGAATTTCTATCGGTTCCCAAAGATCGG CCCCGGAAAAAGTCTGCCCCAGAAACTCTCACGCTTCCAGACCCTGAGAAAAAAGCCACC CTGAATTTACCTGGCATACATTCTTCAGATAAGCCATGTCGGCCCAAATCAGAGTAACTT CATATGAATATTTCATGGGGGTTTATATTTTTGGTTTGGGGTCTTGTTTTGTTTTTTTTT TTAAAGAATCTTCTGATATAGAAAGAGACTGCTTTGTCACTCAAACATGTTCCTTGGATC TCTCGAGTGTGCATGTGGTTTCACATAGAGTATGATTCCCTAAGTGTGCCACACAGCTTC ATTTTAGCTGTAAAATGTACGACTGGCAAAGGACAGAAGGGATCTTCTGTAGCACAGCTG GATGCCAGGGAGGAAGCCTTGTTATTGGGCATTTGATGAGGTTGGTGTGGACTCTGAGGG CCAATAAACGAAAACTTTGCACCACTGTGTTACAAGGTGTAGTAAAACGGAAGTCAGTTT CCTCCCATCCGACCTGAAATTTCCCCAAAATATTCTCAGGCGTAACATACCTAATTGTTC AATTTCGAACTGCTCATTACCAATACTTGAATATCAGTCGTTACTGAGGTTCCGGTTTTG GTTAGTCTGACTCAGGATTTGGGGCCTAATTAACTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 161-279, - strand, RNAz p=0.581668 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 161-279, - strand, RNAz p=0.581668 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 161-407, gnl|bosTau2|chr19 (43697324-43697570) | |
| 161-407, gnl|canFam2|chr9 (15995994-15995827) | |
| 161-407, gnl|danRer3|chr1 (41904560-41904724) | |
| 161-407, gnl|dasNov1|scaffold_11753 (24558-24725) | |
| 161-407, gnl|echTel1|scaffold_10589 (90-257) | |
| 161-407, gnl|fr1|chrUn (128729048-128728884) | |
| 161-407, gnl|galGal2|chr18 (6864862-6864698) | |
| 161-407, gnl|hg17|chr1 (196610115-196610288) | |
| 161-407, gnl|Hg17|chr17 (63119150-63119395) | |
| 161-407, gnl|loxAfr1|scaffold_40720 (13498-13331) | |
| 161-407, gnl|mm7|chr1 (104408926-104409091) | |
| 161-407, gnl|Mm7|chr11 (107321699-107321453) | |
| 161-407, gnl|monDom2|scaffold_18 (17626883-17626716) | |
| 161-407, gnl|oryCun1|scaffold_205751 (123518-123685) | |
| 161-407, gnl|panTro1|chr1 (179291081-179291254) | |
| 161-407, gnl|rheMac2|chr1 (170581696-170581523) | |
| 161-407, gnl|rn3|chr20 (54248219-54248058) | |
| 161-407, gnl|tetNig1|chr18 (1085136-1084972) | |
| 161-407, gnl|xenTro1|scaffold_2065 (51452-51593) | |
| 496-996, gnl|bosTau2|chr19 (43697621-43698126) | |
| 496-996, gnl|Hg17|chr17 (63119485-63119994) | |
| 496-996, gnl|Mm7|chr11 (107321362-107320587) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 161-407, gnl|bosTau2|chr19 (43697324-43697570) | |
| 161-407, gnl|canFam2|chr9 (15995994-15995827) | |
| 161-407, gnl|danRer3|chr1 (41904560-41904724) | |
| 161-407, gnl|dasNov1|scaffold_11753 (24558-24725) | |
| 161-407, gnl|echTel1|scaffold_10589 (90-257) | |
| 161-407, gnl|fr1|chrUn (128729048-128728884) | |
| 161-407, gnl|galGal2|chr18 (6864862-6864698) | |
| 161-407, gnl|hg17|chr1 (196610115-196610288) | |
| 161-407, gnl|Hg17|chr17 (63119150-63119395) | |
| 161-407, gnl|loxAfr1|scaffold_40720 (13498-13331) | |
| 161-407, gnl|mm7|chr1 (104408926-104409091) | |
| 161-407, gnl|Mm7|chr11 (107321699-107321453) | |
| 161-407, gnl|monDom2|scaffold_18 (17626883-17626716) | |
| 161-407, gnl|oryCun1|scaffold_205751 (123518-123685) | |
| 161-407, gnl|panTro1|chr1 (179291081-179291254) | |
| 161-407, gnl|rheMac2|chr1 (170581696-170581523) | |
| 161-407, gnl|rn3|chr20 (54248219-54248058) | |
| 161-407, gnl|tetNig1|chr18 (1085136-1084972) | |
| 161-407, gnl|xenTro1|scaffold_2065 (51452-51593) | |
| 496-996, gnl|bosTau2|chr19 (43697621-43698126) | |
| 496-996, gnl|Hg17|chr17 (63119485-63119994) | |
| 496-996, gnl|Mm7|chr11 (107321362-107320587) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| fty (0.17584) | |
| fbs (0.175346) | |
| hyp (0.142837) | |
| ssp (0.13552) | |
| cly (0.120642) | |
| eje (0.0988338) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fty (0.17584) | |
| fbs (0.175346) | |
| hyp (0.142837) | |
| ssp (0.13552) | |
| cly (0.120642) | |
| eje (0.0988338) |