Non-Coding RNA Search

Ss1.1-rssp13_c15.5

Sequence:


               
               ATCATTTCCAAAGAAAATGATAGTGTGATTCTTAAGATCCAACTGAGTAGTGTGATTTTT
CAAGTCTTGACTTGTCTGGGTACAGACCCAAACCTCTCTTTTTCTACTTGTCATTAAGTT
TTTCCTTACAAGTTATGTATGGTAATTTCAAGGTTCTTAATTATCAAGGCAGTAGTTGGG
AGGTTTCCATTTTCTGATGCAAGTCTGTGCCAGTTTCTTGGCTTTTAGCTAAGTAACAAG
TTTTCTTGAAAGAGAAAATGTCCATAGTGCTTTAACTATTAAATAACTAGGACACCCAGA
AATAGGCCACATTCAATGTCAGACCCCAGACTATTGAATTCAGGGATGGATCTTGAAAAT
ATCAACCTCACCCTGGGGTCCTTTTCTCATTTCAGTCACTAAATCTGAGTTTGATACGAT
AGAGTATTAATCAGGAATCTTTGGGTTAGCAGTAATGGAAGCTGAAATTTATTTTCTCTA
AATAGTTTAGCATTAAAATTAAAAGAAAATAAAAAATGTATGGGAGTTCCCGTCGTGGCT
AAGCGGGTAATGAATCTGACTGGCATCTCTGAGGATGCAGGTTCAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCATTTCCAAAGAAAATGATAGTGTGATTCTTAAGATCCAACTGAGTAGTGTGATTTTT
CAAGTCTTGACTTGTCTGGGTACAGACCCAAACCTCTCTTTTTCTACTTGTCATTAAGTT
TTTCCTTACAAGTTATGTATGGTAATTTCAAGGTTCTTAATTATCAAGGCAGTAGTTGGG
AGGTTTCCATTTTCTGATGCAAGTCTGTGCCAGTTTCTTGGCTTTTAGCTAAGTAACAAG
TTTTCTTGAAAGAGAAAATGTCCATAGTGCTTTAACTATTAAATAACTAGGACACCCAGA
AATAGGCCACATTCAATGTCAGACCCCAGACTATTGAATTCAGGGATGGATCTTGAAAAT
ATCAACCTCACCCTGGGGTCCTTTTCTCATTTCAGTCACTAAATCTGAGTTTGATACGAT
AGAGTATTAATCAGGAATCTTTGGGTTAGCAGTAATGGAAGCTGAAATTTATTTTCTCTA
AATAGTTTAGCATTAAAATTAAAAGAAAATAAAAAATGTATGGGAGTTCCCGTCGTGGCT
AAGCGGGTAATGAATCTGACTGGCATCTCTGAGGATGCAGGTTCAATC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               225-318, + strand, RNAz p=0.508

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               225-318, + strand, RNAz p=0.508

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

Help | Less info


               
               1-318, gnl|bosTau2|chr23 (6563614-6563935)
               

               
               1-318, gnl|canFam2|chr14 (26638477-26638952)
               

               
               1-318, gnl|echTel1|scaffold_312605 (32107-32601)
               

               
               1-318, gnl|hg17|chr7 (7944370-7944855)
               

               
               1-318, gnl|Hg17|chr7 (7944696-7944371)
               

               
               1-318, gnl|loxAfr1|scaffold_46040 (13315-13814)
               

               
               1-318, gnl|mm7|chr6 (8605439-8605967)
               

               
               1-318, gnl|Mm7|chr6 (8605836-8605533)
               

               
               1-318, gnl|oryCun1|scaffold_210302 (139470-139960)
               

               
               1-318, gnl|panTro1|chr6 (8412157-8412642)
               

               
               1-318, gnl|rheMac2|chr3 (118235285-118234800)
               

               
               1-318, gnl|rn3|chr4 (33814307-33814791)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-318, gnl|bosTau2|chr23 (6563614-6563935)
               

               
               1-318, gnl|canFam2|chr14 (26638477-26638952)
               

               
               1-318, gnl|echTel1|scaffold_312605 (32107-32601)
               

               
               1-318, gnl|hg17|chr7 (7944370-7944855)
               

               
               1-318, gnl|Hg17|chr7 (7944696-7944371)
               

               
               1-318, gnl|loxAfr1|scaffold_46040 (13315-13814)
               

               
               1-318, gnl|mm7|chr6 (8605439-8605967)
               

               
               1-318, gnl|Mm7|chr6 (8605836-8605533)
               

               
               1-318, gnl|oryCun1|scaffold_210302 (139470-139960)
               

               
               1-318, gnl|panTro1|chr6 (8412157-8412642)
               

               
               1-318, gnl|rheMac2|chr3 (118235285-118234800)
               

               
               1-318, gnl|rn3|chr4 (33814307-33814791)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               ssp (0.13552)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.13552)
               

               
               ecc (0.115035)

	1-318, gnl\|bosTau2\|chr23 (6563614-6563935)
	1-318, gnl\|canFam2\|chr14 (26638477-26638952)
	1-318, gnl\|echTel1\|scaffold_312605 (32107-32601)
	1-318, gnl\|hg17\|chr7 (7944370-7944855)
	1-318, gnl\|Hg17\|chr7 (7944696-7944371)
	1-318, gnl\|loxAfr1\|scaffold_46040 (13315-13814)
	1-318, gnl\|mm7\|chr6 (8605439-8605967)
	1-318, gnl\|Mm7\|chr6 (8605836-8605533)
	1-318, gnl\|oryCun1\|scaffold_210302 (139470-139960)
	1-318, gnl\|panTro1\|chr6 (8412157-8412642)
	1-318, gnl\|rheMac2\|chr3 (118235285-118234800)
	1-318, gnl\|rn3\|chr4 (33814307-33814791)