Non-Coding RNA Search

Ss1.1-rssp13_d18.5

Sequence:


               
               TGAAGGACCCCCTGGCCAAGGATGAGCGGATTTATGTAACCAATTATTACTACGGTAACA
CCCTGGTAGAGTTCCGGAACCTGGAGAACTTCAAACAAGGTCGCTGGAGCAATTCCTACA
AGCTCCCCTACAGCTGGATCGGCACGGGCCACGTGGTGTACAATGGTGCCTTCTACTACA
ACCGGGCTTTCACCCGAAACATCATCAAGTACGACCTGAAGCAGCGCTATGTGGCTGCCT
GGGCCATGCTGCACGATGTGGCCTATGAGGAGGCCACACCCTGGCGGTGGCAGGGCCACT
CGGACGTGGACTTTGCTGTGGATGAGAATGGCCTGTGGCTCATCTACCCGGCCTTGGACG
ATGAGGGCTTCAGCCAGGAGGTCATTGTCCTCAGCAAGCTCAACTCTGTGGACCTGAGCA
CACAGAAGGAGACGACATGGCGCACGGGGCTGCGACGAAACTTCTATGGCAACTGCTTCG
TCATCTGCGGGGTGCTCTATGCCGTGGACAGCTACAACCAGCGCAATGCCAACATCTCCT
ATGCCTTTGACACCCACACCAACACGCAGATCATTCCCAGGCTGCTGTTTGAGAATGAGT
ATTCCTACACCACCCAGATAGACTACAACCCTAAGGACCGCCTGCTCTACGCCTGGGACA
ATGGCCACCAGGTCACCTACCACGTCATCTTCGCCTACTGACACCCCTGTCCCCACAAGC
AGAAGTGCAGAGGGGCTACTGGCACCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTAGATGGGTATGTGTCGTAAAAAAATATATATTATTTTGTATAATATTGGAA
ATGTAAAATGACAATTTGGATCTATTTTTTTTTTCAATGGATTGTAGATCAATCCACACG
TGTATGTGCTGGTCTCATCCTCCACGGTTTATATTTTTGTGCAAATTAACTTCTCCTTTT
GACCAGTATCCACCTTGCTTCAAATACCCTCAACACCTCCTAGCTCCTACATCTCGGTCT
GAGGTTTCTTCACCTGGATCTTGCAGACAGATGGCTCCAGGAGCAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGGACCCCCTGGCCAAGGATGAGCGGATTTATGTAACCAATTATTACTACGGTAACA
CCCTGGTAGAGTTCCGGAACCTGGAGAACTTCAAACAAGGTCGCTGGAGCAATTCCTACA
AGCTCCCCTACAGCTGGATCGGCACGGGCCACGTGGTGTACAATGGTGCCTTCTACTACA
ACCGGGCTTTCACCCGAAACATCATCAAGTACGACCTGAAGCAGCGCTATGTGGCTGCCT
GGGCCATGCTGCACGATGTGGCCTATGAGGAGGCCACACCCTGGCGGTGGCAGGGCCACT
CGGACGTGGACTTTGCTGTGGATGAGAATGGCCTGTGGCTCATCTACCCGGCCTTGGACG
ATGAGGGCTTCAGCCAGGAGGTCATTGTCCTCAGCAAGCTCAACTCTGTGGACCTGAGCA
CACAGAAGGAGACGACATGGCGCACGGGGCTGCGACGAAACTTCTATGGCAACTGCTTCG
TCATCTGCGGGGTGCTCTATGCCGTGGACAGCTACAACCAGCGCAATGCCAACATCTCCT
ATGCCTTTGACACCCACACCAACACGCAGATCATTCCCAGGCTGCTGTTTGAGAATGAGT
ATTCCTACACCACCCAGATAGACTACAACCCTAAGGACCGCCTGCTCTACGCCTGGGACA
ATGGCCACCAGGTCACCTACCACGTCATCTTCGCCTACTGACACCCCTGTCCCCACAAGC
AGAAGTGCAGAGGGGCTACTGGCACCTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTAGATGGGTATGTGTCGTAAAAAAATATATATTATTTTGTATAATATTGGAA
ATGTAAAATGACAATTTGGATCTATTTTTTTTTTCAATGGATTGTAGATCAATCCACACG
TGTATGTGCTGGTCTCATCCTCCACGGTTTATATTTTTGTGCAAATTAACTTCTCCTTTT
GACCAGTATCCACCTTGCTTCAAATACCCTCAACACCTCCTAGCTCCTACATCTCGGTCT
GAGGTTTCTTCACCTGGATCTTGCAGACAGATGGCTCCAGGAGCAGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|28703910|gb|AAH47472.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28703910|gb|AAH47472.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               177-336, - strand, RNAz p=0.839016

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               177-336, - strand, RNAz p=0.839016

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               98-693, gnl|bosTau2|chr11 (73115874-73116472)
               

               
               98-693, gnl|Hg17|chr9 (124651639-124652237)
               

               
               98-693, gnl|Mm7|chr2 (38967024-38967622)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               98-693, gnl|bosTau2|chr11 (73115874-73116472)
               

               
               98-693, gnl|Hg17|chr9 (124651639-124652237)
               

               
               98-693, gnl|Mm7|chr2 (38967024-38967622)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               nca (0.273748)
               

               
               aor (0.195274)
               

               
               ill (0.175593)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.273748)
               

               
               aor (0.195274)
               

               
               ill (0.175593)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               bla (0.124347)
               

               
               eru (0.120048)
               

               
               jca (0.11396)

	98-693, gnl\|bosTau2\|chr11 (73115874-73116472)
	98-693, gnl\|Hg17\|chr9 (124651639-124652237)
	98-693, gnl\|Mm7\|chr2 (38967024-38967622)

	nca (0.273748)
	aor (0.195274)
	ill (0.175593)
	csk (0.140746)
	ssp (0.13552)
	bla (0.124347)
	eru (0.120048)
	jca (0.11396)