Non-Coding RNA Search

Ss1.1-rssp13_n15.5

Sequence:


               
               GCAAGAAGAGCTCCTCTGTTCACTCTATCCCATCCACAGCCAACCGGCAGAACCGGCCCA
AGTCCCGGGAGTCCCGCGACAAACAGAAAAAAGAAATGGTTTACAGATGAACCGGATAAT
GCCTATCCCAGAAACATTCAAATCAAGCCCATGAGTACCCACATGGCTAACCAGATCAAC
CAATATAAATCCACAAGCAGCTTGATTCCACCAATCAGAGAAGTTGAAGATGAATGTTGA
CTCCCAGGAGACCAGGACTATTTTTTTTAAAGCCTGACAAACTTCATAAATGGTGATGTG
ACTTTTCTTCCTCTTACATGCTGAATCACTGGTGGAAACGTTAGGCGAAGCAAGAATTGC
AAGAAAAATAAAGTAGACAGATCTTTCTTTTTGTCTGCCTTGAATATTGCTTCCATGTAT
TTTGGAAAAGAAAATGATTTCATTTATAAATGAACATACTAAAATAGTCATGTATAGCCT
CTAGCATTTTAAATTATTTTTATTTATTAGAAAGAAAATATATTTTTTCTTTTTTTTTTT
TTCATTGTCAAATATCTTCCCTATATCTAACAATGCAAAATCAAAATGAGTAAGTGGCCA
GACTCCTTAATGCATATTTATCTTCTTTCTCTCTTTTTCTTTGAGGAGAATGATGGTCAC
CACCACAGTTAATCGTAATCAAGGGAAATGGATTATTTAAGCAATTTTAAAATGGTCCAA
TAATGTAAACATGTATTTTAATAAATTAAAAAAAAAGAAGACAAAAGGGGGCAGGTGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAGAAGAGCTCCTCTGTTCACTCTATCCCATCCACAGCCAACCGGCAGAACCGGCCCA
AGTCCCGGGAGTCCCGCGACAAACAGAAAAAAGAAATGGTTTACAGATGAACCGGATAAT
GCCTATCCCAGAAACATTCAAATCAAGCCCATGAGTACCCACATGGCTAACCAGATCAAC
CAATATAAATCCACAAGCAGCTTGATTCCACCAATCAGAGAAGTTGAAGATGAATGTTGA
CTCCCAGGAGACCAGGACTATTTTTTTTAAAGCCTGACAAACTTCATAAATGGTGATGTG
ACTTTTCTTCCTCTTACATGCTGAATCACTGGTGGAAACGTTAGGCGAAGCAAGAATTGC
AAGAAAAATAAAGTAGACAGATCTTTCTTTTTGTCTGCCTTGAATATTGCTTCCATGTAT
TTTGGAAAAGAAAATGATTTCATTTATAAATGAACATACTAAAATAGTCATGTATAGCCT
CTAGCATTTTAAATTATTTTTATTTATTAGAAAGAAAATATATTTTTTCTTTTTTTTTTT
TTCATTGTCAAATATCTTCCCTATATCTAACAATGCAAAATCAAAATGAGTAAGTGGCCA
GACTCCTTAATGCATATTTATCTTCTTTCTCTCTTTTTCTTTGAGGAGAATGATGGTCAC
CACCACAGTTAATCGTAATCAAGGGAAATGGATTATTTAAGCAATTTTAAAATGGTCCAA
TAATGTAAACATGTATTTTAATAAATTAAAAAAAAAGAAGACAAAAGGGGGCAGGTGAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               O88660_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               O88660_RAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               89-208, - strand, RNAz p=0.542077

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               89-208, - strand, RNAz p=0.542077

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               89-780, gnl|bosTau2|chr28 (24715663-24714980)
               

               
               89-780, gnl|Hg17|chr10 (78307654-78306970)
               

               
               89-780, gnl|Mm7|chr14 (20957781-20957089)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               89-780, gnl|bosTau2|chr28 (24715663-24714980)
               

               
               89-780, gnl|Hg17|chr10 (78307654-78306970)
               

               
               89-780, gnl|Mm7|chr14 (20957781-20957089)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               isp (0.150376)
               

               
               ssp (0.13552)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)
               

               
               ssp (0.13552)

	89-780, gnl\|bosTau2\|chr28 (24715663-24714980)
	89-780, gnl\|Hg17\|chr10 (78307654-78306970)
	89-780, gnl\|Mm7\|chr14 (20957781-20957089)