Non-Coding RNA Search

Ss1.1-rssp13_p23.5

Sequence:


               
               ATGTTGGGGGAATGCTCTTGCTGGGGGCGCTTTGGGGGACAGGTCCATAAAGTGACCTGA
TATCATCTTGAGTGAGGACCTCAACCAGCTCTTAGGAGGTTCTGCTCAGCCTTAACTTCT
CAACCATGCATTATGCAGGGTTTCTGTAGGGAGTGGGGGCTGCTGGAAAGGGTATGTCCC
AGAGATTAGGACTGCTGGGCCCTCCTCCATGCCGAGCTGGAGATGGAGGCTAGGATGGGT
CGGAGAGGAATGTAGAACAGGTGGCAAGGAAGCTAAGCCTTTCCTCCTCCTGGCTGATGC
TCTGATGGCCAGAGGACAGGACGCCTCCCAGGCCTGGCTGGGCTCCTGGGTACATCGAAG
GGAATGCTGGGCCCTCGAAAGGCTGGTGTTCTGGGTTACTGTGGGTCAGGGGGGAGCTGG
TGGAGAAGGCAGGGGGAGACTTTGGCTTCTGGTCTCAGCTGTGCCTGTCTGTGACTTTGA
CTGATCTTGGTCTTTACTTCTGCCTATAAGTCGGGGGTAAAAATGCCTGTTTGAAGGAGA
GAAGAGAATGTGGAGGAAAACTCCTTGGAGGAAAGGTACTTGGACCAAGTCTCAGGTGTC
AGTCTGTGGGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTTGGGGGAATGCTCTTGCTGGGGGCGCTTTGGGGGACAGGTCCATAAAGTGACCTGA
TATCATCTTGAGTGAGGACCTCAACCAGCTCTTAGGAGGTTCTGCTCAGCCTTAACTTCT
CAACCATGCATTATGCAGGGTTTCTGTAGGGAGTGGGGGCTGCTGGAAAGGGTATGTCCC
AGAGATTAGGACTGCTGGGCCCTCCTCCATGCCGAGCTGGAGATGGAGGCTAGGATGGGT
CGGAGAGGAATGTAGAACAGGTGGCAAGGAAGCTAAGCCTTTCCTCCTCCTGGCTGATGC
TCTGATGGCCAGAGGACAGGACGCCTCCCAGGCCTGGCTGGGCTCCTGGGTACATCGAAG
GGAATGCTGGGCCCTCGAAAGGCTGGTGTTCTGGGTTACTGTGGGTCAGGGGGGAGCTGG
TGGAGAAGGCAGGGGGAGACTTTGGCTTCTGGTCTCAGCTGTGCCTGTCTGTGACTTTGA
CTGATCTTGGTCTTTACTTCTGCCTATAAGTCGGGGGTAAAAATGCCTGTTTGAAGGAGA
GAAGAGAATGTGGAGGAAAACTCCTTGGAGGAAAGGTACTTGGACCAAGTCTCAGGTGTC
AGTCTGTGGGTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               9-124, - strand, RNAz p=0.51815
               

               
               164-283, + strand, RNAz p=0.542629

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               9-124, - strand, RNAz p=0.51815
               

               
               164-283, + strand, RNAz p=0.542629

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_015299, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_015299, +

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               9-609, gnl|bosTau2|chr10 (11899961-11900570)
               

               
               9-609, gnl|canFam2|chr8 (7416201-7417149)
               

               
               9-609, gnl|dasNov1|scaffold_68109 (1799-2762)
               

               
               9-609, gnl|echTel1|scaffold_316052 (46891-45962)
               

               
               9-609, gnl|hg17|chr14 (23976339-23977302)
               

               
               9-609, gnl|Hg17|chr14 (23976463-23977026)
               

               
               9-609, gnl|mm7|chr14 (50762473-50763437)
               

               
               9-609, gnl|Mm7|chr14 (50762623-50763178)
               

               
               9-609, gnl|oryCun1|scaffold_179870 (5385-6347)
               

               
               9-609, gnl|panTro1|chr15 (22881433-22882395)
               

               
               9-609, gnl|rheMac2|chr7 (87335349-87336320)
               

               
               9-609, gnl|rn3|chr15 (34056065-34057040)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-609, gnl|bosTau2|chr10 (11899961-11900570)
               

               
               9-609, gnl|canFam2|chr8 (7416201-7417149)
               

               
               9-609, gnl|dasNov1|scaffold_68109 (1799-2762)
               

               
               9-609, gnl|echTel1|scaffold_316052 (46891-45962)
               

               
               9-609, gnl|hg17|chr14 (23976339-23977302)
               

               
               9-609, gnl|Hg17|chr14 (23976463-23977026)
               

               
               9-609, gnl|mm7|chr14 (50762473-50763437)
               

               
               9-609, gnl|Mm7|chr14 (50762623-50763178)
               

               
               9-609, gnl|oryCun1|scaffold_179870 (5385-6347)
               

               
               9-609, gnl|panTro1|chr15 (22881433-22882395)
               

               
               9-609, gnl|rheMac2|chr7 (87335349-87336320)
               

               
               9-609, gnl|rn3|chr15 (34056065-34057040)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ssp (0.13552)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.13552)
               

               
               med (0.116252)

	9-124, - strand, RNAz p=0.51815
	164-283, + strand, RNAz p=0.542629

	9-609, gnl\|bosTau2\|chr10 (11899961-11900570)
	9-609, gnl\|canFam2\|chr8 (7416201-7417149)
	9-609, gnl\|dasNov1\|scaffold_68109 (1799-2762)
	9-609, gnl\|echTel1\|scaffold_316052 (46891-45962)
	9-609, gnl\|hg17\|chr14 (23976339-23977302)
	9-609, gnl\|Hg17\|chr14 (23976463-23977026)
	9-609, gnl\|mm7\|chr14 (50762473-50763437)
	9-609, gnl\|Mm7\|chr14 (50762623-50763178)
	9-609, gnl\|oryCun1\|scaffold_179870 (5385-6347)
	9-609, gnl\|panTro1\|chr15 (22881433-22882395)
	9-609, gnl\|rheMac2\|chr7 (87335349-87336320)
	9-609, gnl\|rn3\|chr15 (34056065-34057040)