Ss1.1-rssp15_e2.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
GCGCCGGCGCCAACATCTCCACCTGGGTCTACAGCAGCCCGGGCCGGCACGAGTCACAGG AGCCCTTCCTGCAGTGGCTCCTGCTGCTCAGTAACGAGTCGGCCCTGCCACACGTGCACA CCGTGAGCTACGGGGATGACGAGGACTCCCTCAGCAGCGCCTACATCCAGCGCGTCAACG TCGAGCTCATGAAGGCTGCTGCTCGGGGGCTCACCCTGCTCTTTGCCTCAGGTGACAGTG GGGCTGGGTGTTGGTCAGTCTCTGGAAGACACCAGTTCCGTCCCAGCTTCCCTGCCTCCA GCCCCTACGTCACCACGGTGGGAGGCACATCCTTCCAGAATCCTTTCCGAATCACAAATG AGGTCGTTGACTATATCAGCGGTGGCGGCTTCAGCAACGTGTTCCCCCGGCCTTCATACC AGGAGGAAGCTGTCACCTCGTACCTGACCTCTAGCCCACACCTGCCACCATCCAGCTACT TCAATGCAAGCGGCCGTGCCTACCCAGACGTGGCTGCCCTCTCCGATGGCTACTGGGTGG TCAGCAACCACGTGCCCATTCCGTGGGTGTCTGGCACCTCGGCCTCCACTCCCGTGTTCG GGGGATTCCTGTCCCTGATAAATGAGCACAGAATCCTCAGAGGCCACCCACCTCTTGGCT TTCTCAACCCAAGGCTCTACAAGCAGCATGGAGCAGGGCTCTTTGATGTGACCCATGGCT GCCACGAGTCCTGTCTGAATGAGGAGGTGGAGGGCCAAGGTTTCTGCTCGGGCCCTGGCT GGGATCCTGTGACAGGCTGGGGGACACCCAACTTCCCAGCTCTGCTGAAGACACTAATCG ACCCTTGACCCTGTGCTGCTAGAAAAGGGGGCCTGTCCGCTGCCCCACAGCTGGTGGCTC CGTCCCTTATTCTGCACTGCCAGAAGCCCTGATGAACCCTCAACTGCTGATCGCTGCACA CAGCTGCTCTCCCCAGCCCGGAAAGGCTGTGCACTTGACTGCTAAGCCCACCTGCGCCAT CACACTCAGGGCCCCCTTCACCTGTCCCAGGCCCCTCTACTGATGCACTGTCCGGGAGCC TCCCCGAACCACCCCCTCCCCCCCTGCCCCCATGTCTTCTTGGGCTTTTCAGCAAGGCTT TTCCACGGGGTTGCCGGCACTATCTGTATACCCTGCTTCCCCTCAGCTTCACTCCTCAAT TCATTGCCTTGAGGCCTCTGCTCTCTCACTTTCTCACTCCTCCCTGGTCCGGCGCACACG TGCCAGTCTTGGCTTTACGAGCTCTGTCACCGGTGCCTGCCCCCTCTCCTGCCCTGGCTT TCGGGGTCTCTGACCACCCCCTCTTCCTCTTTCATCCTCTCTTTCCTCTTTCTCTGCTTC CTCACTGAATGCTGGTGTCCTTCACGGCTCCAGCCTTACCCTTCTGCTCTTCTCATCGTC TCCGCAAACAAATCAACCGCTGGCATCCCCAGCCATCACCATCTCATTAAATCAGACTGC CTCTCCAGCAGGGATTGATGCCTCAAGTGCAAAAGCTGTGTGATACTCAGTCCTTCATCG CTCTTCCTCCAAATCCCAGACTGTCGTGTTTCTGCTTTGTAAATGACAATTTCATCCAAC CAAGCCAGAAACCTACAGCGTCAGCCTAGAGTCTCATTTCCTTCAGCTCCCCGCATCACC ACCTTCAATCGACAAGTCCTACTGACTTTACCTCTTAAATATATCTTTATCAGTCCCCAA GTCCTGCCAATTATACCTCCTAAGAATATCTAGAATTTGGGAGTTCCCATCGTGGCTCAG TGGTTAACGAATCCGACTAGGAACCATGAGATTGTGAGTTGGATCCCTGACCTTTCTCAG TGGGGTAAGGATCCAGCGTTGCCGTGAGCTGTGGTGTAGGTTGCAGATGTGGCTCAGATC CCACATTGCTGTGGCTGTGGTGTAGGCTGGTGGCTACAGCTCCGATTCAACCCCTAGCCT GGGAACCTCCATATGCCACTGATGCAGCCCTAGAAAAAGGCAAAAAGA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
GCGCCGGCGCCAACATCTCCACCTGGGTCTACAGCAGCCCGGGCCGGCACGAGTCACAGG AGCCCTTCCTGCAGTGGCTCCTGCTGCTCAGTAACGAGTCGGCCCTGCCACACGTGCACA CCGTGAGCTACGGGGATGACGAGGACTCCCTCAGCAGCGCCTACATCCAGCGCGTCAACG TCGAGCTCATGAAGGCTGCTGCTCGGGGGCTCACCCTGCTCTTTGCCTCAGGTGACAGTG GGGCTGGGTGTTGGTCAGTCTCTGGAAGACACCAGTTCCGTCCCAGCTTCCCTGCCTCCA GCCCCTACGTCACCACGGTGGGAGGCACATCCTTCCAGAATCCTTTCCGAATCACAAATG AGGTCGTTGACTATATCAGCGGTGGCGGCTTCAGCAACGTGTTCCCCCGGCCTTCATACC AGGAGGAAGCTGTCACCTCGTACCTGACCTCTAGCCCACACCTGCCACCATCCAGCTACT TCAATGCAAGCGGCCGTGCCTACCCAGACGTGGCTGCCCTCTCCGATGGCTACTGGGTGG TCAGCAACCACGTGCCCATTCCGTGGGTGTCTGGCACCTCGGCCTCCACTCCCGTGTTCG GGGGATTCCTGTCCCTGATAAATGAGCACAGAATCCTCAGAGGCCACCCACCTCTTGGCT TTCTCAACCCAAGGCTCTACAAGCAGCATGGAGCAGGGCTCTTTGATGTGACCCATGGCT GCCACGAGTCCTGTCTGAATGAGGAGGTGGAGGGCCAAGGTTTCTGCTCGGGCCCTGGCT GGGATCCTGTGACAGGCTGGGGGACACCCAACTTCCCAGCTCTGCTGAAGACACTAATCG ACCCTTGACCCTGTGCTGCTAGAAAAGGGGGCCTGTCCGCTGCCCCACAGCTGGTGGCTC CGTCCCTTATTCTGCACTGCCAGAAGCCCTGATGAACCCTCAACTGCTGATCGCTGCACA CAGCTGCTCTCCCCAGCCCGGAAAGGCTGTGCACTTGACTGCTAAGCCCACCTGCGCCAT CACACTCAGGGCCCCCTTCACCTGTCCCAGGCCCCTCTACTGATGCACTGTCCGGGAGCC TCCCCGAACCACCCCCTCCCCCCCTGCCCCCATGTCTTCTTGGGCTTTTCAGCAAGGCTT TTCCACGGGGTTGCCGGCACTATCTGTATACCCTGCTTCCCCTCAGCTTCACTCCTCAAT TCATTGCCTTGAGGCCTCTGCTCTCTCACTTTCTCACTCCTCCCTGGTCCGGCGCACACG TGCCAGTCTTGGCTTTACGAGCTCTGTCACCGGTGCCTGCCCCCTCTCCTGCCCTGGCTT TCGGGGTCTCTGACCACCCCCTCTTCCTCTTTCATCCTCTCTTTCCTCTTTCTCTGCTTC CTCACTGAATGCTGGTGTCCTTCACGGCTCCAGCCTTACCCTTCTGCTCTTCTCATCGTC TCCGCAAACAAATCAACCGCTGGCATCCCCAGCCATCACCATCTCATTAAATCAGACTGC CTCTCCAGCAGGGATTGATGCCTCAAGTGCAAAAGCTGTGTGATACTCAGTCCTTCATCG CTCTTCCTCCAAATCCCAGACTGTCGTGTTTCTGCTTTGTAAATGACAATTTCATCCAAC CAAGCCAGAAACCTACAGCGTCAGCCTAGAGTCTCATTTCCTTCAGCTCCCCGCATCACC ACCTTCAATCGACAAGTCCTACTGACTTTACCTCTTAAATATATCTTTATCAGTCCCCAA GTCCTGCCAATTATACCTCCTAAGAATATCTAGAATTTGGGAGTTCCCATCGTGGCTCAG TGGTTAACGAATCCGACTAGGAACCATGAGATTGTGAGTTGGATCCCTGACCTTTCTCAG TGGGGTAAGGATCCAGCGTTGCCGTGAGCTGTGGTGTAGGTTGCAGATGTGGCTCAGATC CCACATTGCTGTGGCTGTGGTGTAGGCTGGTGGCTACAGCTCCGATTCAACCCCTAGCCT GGGAACCTCCATATGCCACTGATGCAGCCCTAGAAAAAGGCAAAAAGA |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 5 entry(ies) | More info |
Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
460-1534, + strand, RNAz p=0.908871 | |
708-838, + strand, RNAz p=0.979703 | |
708-838, - strand, RNAz p=0.979703 | |
708-838, + strand, RNAz p=0.993179 | |
708-838, - strand, RNAz p=0.993179 |
Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
460-1534, + strand, RNAz p=0.908871 | |
708-838, + strand, RNAz p=0.979703 | |
708-838, - strand, RNAz p=0.979703 | |
708-838, + strand, RNAz p=0.993179 | |
708-838, - strand, RNAz p=0.993179 |
Aligned organism(s): 50 entry(ies) | More info |
Aligned organism(s): 50 entry(ies) | Help | Less info |
39-236, gnl|bosTau2|chr15 (28912624-28912427) | |
39-236, gnl|canFam2|chr21 (33110939-33111146) | |
39-236, gnl|danRer3|chr17 (33616308-33616503) | |
39-236, gnl|fr1|chrUn (119575132-119574939) | |
39-236, gnl|galGal2|chrUn (89743043-89742847) | |
39-236, gnl|hg17|chr11 (6594112-6594336) | |
39-236, gnl|Hg17|chr11 (6594314-6594117) | |
39-236, gnl|mm7|chr7 (101805294-101805505) | |
39-236, gnl|Mm7|chr7 (101805496-101805299) | |
39-236, gnl|monDom2|scaffold_43 (18307152-18306902) | |
39-236, gnl|oryCun1|scaffold_200178 (49592-49808) | |
39-236, gnl|panTro1|chr9 (6737535-6737746) | |
39-236, gnl|rheMac2|chr14 (65586745-65586526) | |
39-236, gnl|rn3|chr1 (163588689-163588900) | |
39-236, gnl|tetNig1|chr10 (5693785-5693583) | |
420-582, gnl|bosTau2|chr15 (28911453-28911291) | |
420-582, gnl|canFam2|chr21 (33109858-33109964) | |
420-582, gnl|danRer3|chr17 (33613506-33613612) | |
420-582, gnl|dasNov1|scaffold_22726 (14979-14881) | |
420-582, gnl|fr1|chrUn (119575745-119575642) | |
420-582, gnl|hg17|chr11 (6592977-6593083) | |
420-582, gnl|Hg17|chr11 (6593139-6592977) | |
420-582, gnl|mm7|chr7 (101803807-101803913) | |
420-582, gnl|Mm7|chr7 (101803969-101803807) | |
420-582, gnl|monDom2|scaffold_43 (18308354-18308248) | |
420-582, gnl|oryCun1|scaffold_211436 (12425-12531) | |
420-582, gnl|panTro1|chr9 (6736390-6736496) | |
420-582, gnl|rheMac2|chr14 (65587891-65587785) | |
420-582, gnl|rn3|chr1 (163587250-163587356) | |
420-582, gnl|tetNig1|chr10 (5694396-5694290) | |
420-582, gnl|xenTro1|scaffold_1488 (109876-109958) | |
708-838, gnl|bosTau2|chr15 (28910799-28910669) | |
708-838, gnl|canFam2|chr21 (33109050-33109206) | |
708-838, gnl|danRer3|chr17 (33610238-33610372) | |
708-838, gnl|dasNov1|scaffold_22726 (15600-15444) | |
708-838, gnl|echTel1|scaffold_308473 (28080-27924) | |
708-838, gnl|fr1|chrUn (119576166-119576020) | |
708-838, gnl|hg17|chr11 (6592350-6592506) | |
708-838, gnl|Hg17|chr11 (6592493-6592363) | |
708-838, gnl|mm7|chr7 (101803050-101803205) | |
708-838, gnl|Mm7|chr7 (101803193-101803063) | |
708-838, gnl|monDom2|scaffold_43 (18309033-18308868) | |
708-838, gnl|oryCun1|scaffold_211436 (11798-11954) | |
708-838, gnl|panTro1|chr9 (6735763-6735919) | |
708-838, gnl|rheMac2|chr14 (65588518-65588362) | |
708-838, gnl|rn3|chr1 (163586631-163586786) | |
708-838, gnl|tetNig1|chr10 (5694857-5694709) | |
708-838, gnl|xenTro1|scaffold_1488 (107411-107549) | |
1416-1777, gnl|bosTau2|chr15 (32783341-32782962) | |
1416-1777, gnl|Hg17|chr11 (6591767-6591415) |
Aligned organism(s): 50 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
39-236, gnl|bosTau2|chr15 (28912624-28912427) | |
39-236, gnl|canFam2|chr21 (33110939-33111146) | |
39-236, gnl|danRer3|chr17 (33616308-33616503) | |
39-236, gnl|fr1|chrUn (119575132-119574939) | |
39-236, gnl|galGal2|chrUn (89743043-89742847) | |
39-236, gnl|hg17|chr11 (6594112-6594336) | |
39-236, gnl|Hg17|chr11 (6594314-6594117) | |
39-236, gnl|mm7|chr7 (101805294-101805505) | |
39-236, gnl|Mm7|chr7 (101805496-101805299) | |
39-236, gnl|monDom2|scaffold_43 (18307152-18306902) | |
39-236, gnl|oryCun1|scaffold_200178 (49592-49808) | |
39-236, gnl|panTro1|chr9 (6737535-6737746) | |
39-236, gnl|rheMac2|chr14 (65586745-65586526) | |
39-236, gnl|rn3|chr1 (163588689-163588900) | |
39-236, gnl|tetNig1|chr10 (5693785-5693583) | |
420-582, gnl|bosTau2|chr15 (28911453-28911291) | |
420-582, gnl|canFam2|chr21 (33109858-33109964) | |
420-582, gnl|danRer3|chr17 (33613506-33613612) | |
420-582, gnl|dasNov1|scaffold_22726 (14979-14881) | |
420-582, gnl|fr1|chrUn (119575745-119575642) | |
420-582, gnl|hg17|chr11 (6592977-6593083) | |
420-582, gnl|Hg17|chr11 (6593139-6592977) | |
420-582, gnl|mm7|chr7 (101803807-101803913) | |
420-582, gnl|Mm7|chr7 (101803969-101803807) | |
420-582, gnl|monDom2|scaffold_43 (18308354-18308248) | |
420-582, gnl|oryCun1|scaffold_211436 (12425-12531) | |
420-582, gnl|panTro1|chr9 (6736390-6736496) | |
420-582, gnl|rheMac2|chr14 (65587891-65587785) | |
420-582, gnl|rn3|chr1 (163587250-163587356) | |
420-582, gnl|tetNig1|chr10 (5694396-5694290) | |
420-582, gnl|xenTro1|scaffold_1488 (109876-109958) | |
708-838, gnl|bosTau2|chr15 (28910799-28910669) | |
708-838, gnl|canFam2|chr21 (33109050-33109206) | |
708-838, gnl|danRer3|chr17 (33610238-33610372) | |
708-838, gnl|dasNov1|scaffold_22726 (15600-15444) | |
708-838, gnl|echTel1|scaffold_308473 (28080-27924) | |
708-838, gnl|fr1|chrUn (119576166-119576020) | |
708-838, gnl|hg17|chr11 (6592350-6592506) | |
708-838, gnl|Hg17|chr11 (6592493-6592363) | |
708-838, gnl|mm7|chr7 (101803050-101803205) | |
708-838, gnl|Mm7|chr7 (101803193-101803063) | |
708-838, gnl|monDom2|scaffold_43 (18309033-18308868) | |
708-838, gnl|oryCun1|scaffold_211436 (11798-11954) | |
708-838, gnl|panTro1|chr9 (6735763-6735919) | |
708-838, gnl|rheMac2|chr14 (65588518-65588362) | |
708-838, gnl|rn3|chr1 (163586631-163586786) | |
708-838, gnl|tetNig1|chr10 (5694857-5694709) | |
708-838, gnl|xenTro1|scaffold_1488 (107411-107549) | |
1416-1777, gnl|bosTau2|chr15 (32783341-32782962) | |
1416-1777, gnl|Hg17|chr11 (6591767-6591415) |
Expressed library(ies): 18 entry(ies) | More info |
Expressed library(ies): 18 entry(ies) | Help | Less info |
cga (0.558191) | |
ute (0.398353) | |
cov (0.396458) | |
lnt (0.284616) | |
cly (0.241284) | |
nms (0.213858) | |
hea (0.204499) | |
sag (0.182715) | |
ton (0.1755) | |
rec (0.17307) | |
nje (0.16592) | |
csp (0.161186) | |
fat (0.147427) | |
hlv (0.139256) | |
ssp (0.13552) | |
ste (0.135208) | |
spc (0.113366) | |
cty (0.10408) |
Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
cga (0.558191) | |
ute (0.398353) | |
cov (0.396458) | |
lnt (0.284616) | |
cly (0.241284) | |
nms (0.213858) | |
hea (0.204499) | |
sag (0.182715) | |
ton (0.1755) | |
rec (0.17307) | |
nje (0.16592) | |
csp (0.161186) | |
fat (0.147427) | |
hlv (0.139256) | |
ssp (0.13552) | |
ste (0.135208) | |
spc (0.113366) | |
cty (0.10408) |