Non-Coding RNA Search

Ss1.1-rssp15_f20.5

Sequence:


               
               GTGACAGGTGGCACACAGTGGAGTCAGTCTTTGGTCCTAGTTTGATCACAGAAACAGGTA
TTCATGACAGCAATGGCCAAAGCACTGTCCTTGGGAAAACTGGCCTCCTGGAAGGGCTAG
AAGGGACTACTCGTGACTCCTGTCATGTCCTCTTGTGTCCTGGATGTCAGTTCCTTGGCT
TGGGGGTGGGGGTATGGTGTCCTGAACAGGAGTCAAGACGAGTTTATCGGTGAACCGTGG
GCTCCTTGTCTCCAATCACGAGTTCTGGCTGGCTGTTCCTCTGACCCTCTGTCTCTGAAG
GCGAGGCTTCCCTGATCACCCTAAAGGGAGCGCCATGACCAGGCACAATCACATCGGCAG
TGCCTAAGATCCTCTTCCGGCTGCGCTTCTGGGCTACGGGGTCTTCACTCAGCGCCTGCC
ACGAGTCCTCGTCCCCATCACGTTCAAACACATCGCCCACTACCATTACAGTGCCCAGGG
TTGTGCCAGCCACCACCACGCTCACGTCCCGCTGGCCACCATGGCCCGGCGTAGCCCACA
CCTCGAGTCCAGGCCCCAACCGCAGAGGCCGCTCCTCAGCCAGCCCGTGAGGGAGATAGA
GGCCTCCGGGAAGGCAGAAGTCGTGCGAGACCAGCAGAGCTGCCCGGGGAAAGAGCCCCA
GATTCCCGATGTGGTCCGAATGCCCGTGGGTCCCCACCACAAGAGTCACATCACCCGGGG
ATAGGCCCTGCCCCGCCAGAGCCCCCAAGAGTGCCTCCCGAGCCCACGGGCCCGCAGTGT
CCACGAGGATGGGGCCACGGGCCGCCTCCTCCAGGGCGGTCTTCACCTCGTGGCTCTCGG
GCGAGGGCTCTCGGTGGCTGGAGGCAGGACCCCAGGCCTGAGGCAAGACAAGGGTCACGG
AGCCATCGGCACGTAAGGCCTCGCCGACTCCCTCGGGCTCCGCGTAGCCCTGTAGCAGAA
CCACCACGGAGTAGGGGTCACCGGGCACCAGCAGAGGGGTGTCTCCGCGCAGCGGCTCGG
TGCGCACTAGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGACAGGTGGCACACAGTGGAGTCAGTCTTTGGTCCTAGTTTGATCACAGAAACAGGTA
TTCATGACAGCAATGGCCAAAGCACTGTCCTTGGGAAAACTGGCCTCCTGGAAGGGCTAG
AAGGGACTACTCGTGACTCCTGTCATGTCCTCTTGTGTCCTGGATGTCAGTTCCTTGGCT
TGGGGGTGGGGGTATGGTGTCCTGAACAGGAGTCAAGACGAGTTTATCGGTGAACCGTGG
GCTCCTTGTCTCCAATCACGAGTTCTGGCTGGCTGTTCCTCTGACCCTCTGTCTCTGAAG
GCGAGGCTTCCCTGATCACCCTAAAGGGAGCGCCATGACCAGGCACAATCACATCGGCAG
TGCCTAAGATCCTCTTCCGGCTGCGCTTCTGGGCTACGGGGTCTTCACTCAGCGCCTGCC
ACGAGTCCTCGTCCCCATCACGTTCAAACACATCGCCCACTACCATTACAGTGCCCAGGG
TTGTGCCAGCCACCACCACGCTCACGTCCCGCTGGCCACCATGGCCCGGCGTAGCCCACA
CCTCGAGTCCAGGCCCCAACCGCAGAGGCCGCTCCTCAGCCAGCCCGTGAGGGAGATAGA
GGCCTCCGGGAAGGCAGAAGTCGTGCGAGACCAGCAGAGCTGCCCGGGGAAAGAGCCCCA
GATTCCCGATGTGGTCCGAATGCCCGTGGGTCCCCACCACAAGAGTCACATCACCCGGGG
ATAGGCCCTGCCCCGCCAGAGCCCCCAAGAGTGCCTCCCGAGCCCACGGGCCCGCAGTGT
CCACGAGGATGGGGCCACGGGCCGCCTCCTCCAGGGCGGTCTTCACCTCGTGGCTCTCGG
GCGAGGGCTCTCGGTGGCTGGAGGCAGGACCCCAGGCCTGAGGCAAGACAAGGGTCACGG
AGCCATCGGCACGTAAGGCCTCGCCGACTCCCTCGGGCTCCGCGTAGCCCTGTAGCAGAA
CCACCACGGAGTAGGGGTCACCGGGCACCAGCAGAGGGGTGTCTCCGCGCAGCGGCTCGG
TGCGCACTAGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61866992|ref|XP_581953.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61866992|ref|XP_581953.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               26-1032, gnl|bosTau2|chr25 (33201818-33200830)
               

               
               26-1032, gnl|Hg17|chr7 (99370677-99369665)
               

               
               26-1032, gnl|Mm7|chr5 (137140897-137139930)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               26-1032, gnl|bosTau2|chr25 (33201818-33200830)
               

               
               26-1032, gnl|Hg17|chr7 (99370677-99369665)
               

               
               26-1032, gnl|Mm7|chr5 (137140897-137139930)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               ill (0.175593)
               

               
               cje (0.165235)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               cje (0.165235)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)

	26-1032, gnl\|bosTau2\|chr25 (33201818-33200830)
	26-1032, gnl\|Hg17\|chr7 (99370677-99369665)
	26-1032, gnl\|Mm7\|chr5 (137140897-137139930)

	ill (0.175593)
	cje (0.165235)
	ssp (0.13552)
	ste (0.135208)
	ova (0.129132)
	cly (0.120642)
	pgl (0.118483)