Non-Coding RNA Search

Ss1.1-rssp15_i15.5

Sequence:


               
               AACAGGAAGCCCTGGATTTGGAGCTCTATTGGGGGTTTTGTTTTATTTGTTTTGTTTCTT
TTCATTTTGTCTTAAGAAGATGAACCGTGAAACCACAACCCTGATATCCTTAAAGGAGAC
AATGACAAGAGTAGACCACAAACTTCAAGCTTTAGAAGCACAGTTTAAAGAACTGGACTT
TACCAAGGATAACCTGGCACAGAAATTTGAACATCATAGCAAGACTTTGGCAAACCAAGT
AGCTCAAGATGAACTATGGACAGCAGTTCTGTCACTCAAGTTCACCCCAATGGAATTGAA
TATTTTATACAGCTATGTCATTGAAGTCCTCATTTGCTTGCACACCCGTGTACTTGAGGA
GCTGCCAGACCTGGTGAGAGGTCTTCCCACCTTAACCTCCATCCTTAGACGAAAAGTCAA
GAACAAGCGCATTAGAGTTGTGTGGGAGTCTGTCCTGGCGGAGTGTGGGCTGCAAGAAGG
AGACATCACAGCACTTTGTACCTTCTTTGTAGCACATGGTAACAAGGCAGAACACTATAT
TGCTAAAGTAAGGCAGATGTATATAAGGGATGTCAATTTTTTGATCACTAACATGGTAAA
GAACCAAGCTCTGCAGGATGGTTTGCTGAAGGCTGTTCAGGTCATTGAGAAGGGGAAAGC
AGTGAGGGCTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAGGAAGCCCTGGATTTGGAGCTCTATTGGGGGTTTTGTTTTATTTGTTTTGTTTCTT
TTCATTTTGTCTTAAGAAGATGAACCGTGAAACCACAACCCTGATATCCTTAAAGGAGAC
AATGACAAGAGTAGACCACAAACTTCAAGCTTTAGAAGCACAGTTTAAAGAACTGGACTT
TACCAAGGATAACCTGGCACAGAAATTTGAACATCATAGCAAGACTTTGGCAAACCAAGT
AGCTCAAGATGAACTATGGACAGCAGTTCTGTCACTCAAGTTCACCCCAATGGAATTGAA
TATTTTATACAGCTATGTCATTGAAGTCCTCATTTGCTTGCACACCCGTGTACTTGAGGA
GCTGCCAGACCTGGTGAGAGGTCTTCCCACCTTAACCTCCATCCTTAGACGAAAAGTCAA
GAACAAGCGCATTAGAGTTGTGTGGGAGTCTGTCCTGGCGGAGTGTGGGCTGCAAGAAGG
AGACATCACAGCACTTTGTACCTTCTTTGTAGCACATGGTAACAAGGCAGAACACTATAT
TGCTAAAGTAAGGCAGATGTATATAAGGGATGTCAATTTTTTGATCACTAACATGGTAAA
GAACCAAGCTCTGCAGGATGGTTTGCTGAAGGCTGTTCAGGTCATTGAGAAGGGGAAAGC
AGTGAGGGCTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|27480159|ref|XP_173087.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|27480159|ref|XP_173087.2|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               359-478, - strand, RNAz p=0.635335

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               359-478, - strand, RNAz p=0.635335

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-129, gnl|bosTau2|chr1 (43216140-43216015)
               

               
               3-129, gnl|Hg17|chr3 (197730469-197730341)
               

               
               3-129, gnl|Mm7|chr16 (31946063-31946183)
               


               
               280-672, gnl|bosTau2|chr1 (43209922-43209530)
               

               
               280-672, gnl|Hg17|chr3 (197723512-197723120)
               

               
               280-672, gnl|Mm7|chr16 (31948238-31948630)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-129, gnl|bosTau2|chr1 (43216140-43216015)
               

               
               3-129, gnl|Hg17|chr3 (197730469-197730341)
               

               
               3-129, gnl|Mm7|chr16 (31946063-31946183)
               


               
               280-672, gnl|bosTau2|chr1 (43209922-43209530)
               

               
               280-672, gnl|Hg17|chr3 (197723512-197723120)
               

               
               280-672, gnl|Mm7|chr16 (31948238-31948630)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               tbr (0.308356)
               

               
               ssp (0.271039)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tbr (0.308356)
               

               
               ssp (0.271039)

	3-129, gnl\|bosTau2\|chr1 (43216140-43216015)
	3-129, gnl\|Hg17\|chr3 (197730469-197730341)
	3-129, gnl\|Mm7\|chr16 (31946063-31946183)

	280-672, gnl\|bosTau2\|chr1 (43209922-43209530)
	280-672, gnl\|Hg17\|chr3 (197723512-197723120)
	280-672, gnl\|Mm7\|chr16 (31948238-31948630)