Non-Coding RNA Search

Ss1.1-rssp15_p1.5

Sequence:


               
               ACTCCTTTGATTTTATGGGCTGAAAGAAATGTGCTGTGTTTCATCAAAATAATAAGTGCC
TTCTATGACTCATGTCACTCACTGGACCCAGAGCTGGCTGCTAGTCCTGCTGAGAGCGAC
ATGAATCTTTTACAAAATATAATTGATCTATACATCCTGGAGCACGCAAAGGATGCCACC
CAGCAAAACGGGAGCTGTCCGGAGAAGGAGAGGCCCAGCCTCTCAAAGCAGTAGGGAGCG
GCCCCCTGATCGTTTAACCAGGAGCCTACCCCCCACCCCGCCCCCGCACCTTGTAAAGAC
AGCTGTAGGCACAGTCAAACAACACTTGAGTTTCTTTCCACTTGAAGTAAAAATACATGA
AATGAAATCCAATCTTCATGAATTTTTACACGCATGCTGCTCAAGGTAGAATTCGGGGTT
GCATTTTGAAGTCTTTTATTTAAATCCCCATCTTTGTTTCCTGGTCGAGGGGTCCCAGCG
GCTTGTGAAGTGGCACGGGTGCCCCCTGGTGTCCGACTGCAGAACTGCGGGTGCTGCAAA
CCCCCGTGAAACTGAAATCTGTCTCCGGGGATTTTAAGCAGAATTTGAAAAATGCAGCTG
AAATGTTAAAATTCCCTGAGTGCTTTCTCTCATGGCTTCTCAGCGTCTCCTCGTGTGCAC
ATGCAGCAGGTCGTTCCCACGCACATGTTCTGAGGGGAGGCTGGGAACCACCTGGCGTTG
TGAGAAGCCATGAATATATTAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCCTTTGATTTTATGGGCTGAAAGAAATGTGCTGTGTTTCATCAAAATAATAAGTGCC
TTCTATGACTCATGTCACTCACTGGACCCAGAGCTGGCTGCTAGTCCTGCTGAGAGCGAC
ATGAATCTTTTACAAAATATAATTGATCTATACATCCTGGAGCACGCAAAGGATGCCACC
CAGCAAAACGGGAGCTGTCCGGAGAAGGAGAGGCCCAGCCTCTCAAAGCAGTAGGGAGCG
GCCCCCTGATCGTTTAACCAGGAGCCTACCCCCCACCCCGCCCCCGCACCTTGTAAAGAC
AGCTGTAGGCACAGTCAAACAACACTTGAGTTTCTTTCCACTTGAAGTAAAAATACATGA
AATGAAATCCAATCTTCATGAATTTTTACACGCATGCTGCTCAAGGTAGAATTCGGGGTT
GCATTTTGAAGTCTTTTATTTAAATCCCCATCTTTGTTTCCTGGTCGAGGGGTCCCAGCG
GCTTGTGAAGTGGCACGGGTGCCCCCTGGTGTCCGACTGCAGAACTGCGGGTGCTGCAAA
CCCCCGTGAAACTGAAATCTGTCTCCGGGGATTTTAAGCAGAATTTGAAAAATGCAGCTG
AAATGTTAAAATTCCCTGAGTGCTTTCTCTCATGGCTTCTCAGCGTCTCCTCGTGTGCAC
ATGCAGCAGGTCGTTCCCACGCACATGTTCTGAGGGGAGGCTGGGAACCACCTGGCGTTG
TGAGAAGCCATGAATATATTAGGA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-734, gnl|bosTau2|chr1 (88346819-88346099)
               

               
               1-734, gnl|Hg17|chr3 (135803070-135802333)
               

               
               1-734, gnl|Mm7|chr9 (102236014-102236761)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-734, gnl|bosTau2|chr1 (88346819-88346099)
               

               
               1-734, gnl|Hg17|chr3 (135803070-135802333)
               

               
               1-734, gnl|Mm7|chr9 (102236014-102236761)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ssp (0.13552)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.13552)
               

               
               ldo (0.0970026)

	1-734, gnl\|bosTau2\|chr1 (88346819-88346099)
	1-734, gnl\|Hg17\|chr3 (135803070-135802333)
	1-734, gnl\|Mm7\|chr9 (102236014-102236761)