Non-Coding RNA Search

Ss1.1-rssp17_n2.5

Sequence:


               
               CTTTTTCAAAGCACAAATAAATTGAGACCCAAAAACACTAGCTAGAGGGTGGTTCTGTTG
GCTGCAGAGAAGGGCATACCCTGGTCCACCAAACTCAGAGTCAAGCTGGACCCATGGATG
TGTGTCCTCTTCCTCTGCATGCGTTTGTAGTTGAGTTTGGGGGCTTACATGGATGACTGT
GAAGATTGCTTTTTGCTCTTAAGTCAAATTTATTTCTTGTCTTGTTCTTCTAAAAATTTT
TTCAGGGCAGATATTTTTCCTGTCTTAACCACAGGTACCCTAAGTCTTGGCCCCCTCTCT
GCCTCTCCCAAATTACCCCTGGGATGAGCTTTGTGTTATGACATCTAATCCATGTCCATC
TTTGGTCTTTCACCCTTTAAGACAGTCCTCTCCCTTTGTAAAGCTTTCTGAACCATGAAG
AAGCCTTTCCAAAGCTCTGTCCTCACTGCTCTCTTCCGGGTGCTCTATCTCCTGGTGGAC
CCTCTGCTACCAGGATCGATTCAGGGACATCTTGTGCTTTCAGTGGAGAGTCTGGAGGCC
AGTTTCCACAACCTAAGTAGGGAGAAGCTGAAGAACCGGGCTTTGGTCTCTTGCCATTTA
TTGCCACCTTAGCAAGAGACCTAAATGAAATCGGAGCTTTTTCAGAACATGTCCTAGAAT
CTCAGATCGTCTAAGCTGCAGTAGAACAGGGTTTCTCAACCTGAACCCTGTTGATATTTG
GACCAGATAATTCTCTGTGGTACGGGGTTGTCCTGCATTGTAGAAGGTTTAGCAATATCC
TGGGCATCTGCCCAGTAGATATACCCTTTCCTCAGCTGTCACAATCCCAAATGTCCCCAG
ACTTTCCCTAATGCCCCATGGGATACAGAATCACCTCTGGTTGAGAACTGCTGCCCTACG
TCTGACAGGTGACAAATGCCGTATTTGAGATTTTTTTTTCCTTCCATTTGACTCTGAGAA
AGCTTCTCTCCTGGGAGCCTTTCAGGCCATCTAGAGGCTGGTAGGAATAGAACTCAAATG
ACATTGTATCAATTCTTTTTTCTGTGTCAGAACTTCCATTTCACAACAGCCTCTCTCTGC
TACAAGTGTTCTTTCCTTCATCCCTGGGGAAGTCGGGAACAGCTGGTCACTATCACCCCT
GTAATCAACTCACACCTATTTAAAGTGCTTTTCTAATTTGCTCTTCATTCCTTATTTTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTTCAAAGCACAAATAAATTGAGACCCAAAAACACTAGCTAGAGGGTGGTTCTGTTG
GCTGCAGAGAAGGGCATACCCTGGTCCACCAAACTCAGAGTCAAGCTGGACCCATGGATG
TGTGTCCTCTTCCTCTGCATGCGTTTGTAGTTGAGTTTGGGGGCTTACATGGATGACTGT
GAAGATTGCTTTTTGCTCTTAAGTCAAATTTATTTCTTGTCTTGTTCTTCTAAAAATTTT
TTCAGGGCAGATATTTTTCCTGTCTTAACCACAGGTACCCTAAGTCTTGGCCCCCTCTCT
GCCTCTCCCAAATTACCCCTGGGATGAGCTTTGTGTTATGACATCTAATCCATGTCCATC
TTTGGTCTTTCACCCTTTAAGACAGTCCTCTCCCTTTGTAAAGCTTTCTGAACCATGAAG
AAGCCTTTCCAAAGCTCTGTCCTCACTGCTCTCTTCCGGGTGCTCTATCTCCTGGTGGAC
CCTCTGCTACCAGGATCGATTCAGGGACATCTTGTGCTTTCAGTGGAGAGTCTGGAGGCC
AGTTTCCACAACCTAAGTAGGGAGAAGCTGAAGAACCGGGCTTTGGTCTCTTGCCATTTA
TTGCCACCTTAGCAAGAGACCTAAATGAAATCGGAGCTTTTTCAGAACATGTCCTAGAAT
CTCAGATCGTCTAAGCTGCAGTAGAACAGGGTTTCTCAACCTGAACCCTGTTGATATTTG
GACCAGATAATTCTCTGTGGTACGGGGTTGTCCTGCATTGTAGAAGGTTTAGCAATATCC
TGGGCATCTGCCCAGTAGATATACCCTTTCCTCAGCTGTCACAATCCCAAATGTCCCCAG
ACTTTCCCTAATGCCCCATGGGATACAGAATCACCTCTGGTTGAGAACTGCTGCCCTACG
TCTGACAGGTGACAAATGCCGTATTTGAGATTTTTTTTTCCTTCCATTTGACTCTGAGAA
AGCTTCTCTCCTGGGAGCCTTTCAGGCCATCTAGAGGCTGGTAGGAATAGAACTCAAATG
ACATTGTATCAATTCTTTTTTCTGTGTCAGAACTTCCATTTCACAACAGCCTCTCTCTGC
TACAAGTGTTCTTTCCTTCATCCCTGGGGAAGTCGGGAACAGCTGGTCACTATCACCCCT
GTAATCAACTCACACCTATTTAAAGTGCTTTTCTAATTTGCTCTTCATTCCTTATTTTAC

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               2-1197, gnl|bosTau2|chr15 (25016242-25015057)
               

               
               2-1197, gnl|Hg17|chr11 (12917631-12918829)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1197, gnl|bosTau2|chr15 (25016242-25015057)
               

               
               2-1197, gnl|Hg17|chr11 (12917631-12918829)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               ssp (0.271039)
               

               
               hea (0.204499)
               

               
               eep (0.122564)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.271039)
               

               
               hea (0.204499)
               

               
               eep (0.122564)

	2-1197, gnl\|bosTau2\|chr15 (25016242-25015057)
	2-1197, gnl\|Hg17\|chr11 (12917631-12918829)