Non-Coding RNA Search

Ss1.1-rssp18_a11.5

Sequence:


               
               TCTCAAAAACACTAGGGACTTTTAAGTGTCTTAGCACTATCCTCAATGTGCCTGCTCCGC
CAGGGATGCCCGGCCCCGCCAGGAACGCATTCCCGGCGTGTGGCGTTTTCTCCAGGCCAT
GCCAAACGGTGTTGACAGCAGCCTTGCAGATCGCTTCTTTCCCAGTGGGGGATGAAAACT
TGGGTCAGAAATCCAGTAAGGCACACGGATTTCCTTCATTCCATCTCAGACCGGGGAAGA
AGGGTATCTTAAAGGGAAAAAAGCAGGGACCAGTGGTTTTCTGGGCAGATTTGCAAGGCT
GGCTTCTAAAAGAGCACAAGGAGATAAAGTGAAGAAAGGGCTGGACTACTGTAAAAGTTA
CAAATACATAGTTAGACCAATAGATTTATATAGTCACGTTTTTGTCATGTAATTTATTAA
CTATTACAAAAACACAACTAAAAGTATGAAGTATTTCTCTGGCTCTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCAAAAACACTAGGGACTTTTAAGTGTCTTAGCACTATCCTCAATGTGCCTGCTCCGC
CAGGGATGCCCGGCCCCGCCAGGAACGCATTCCCGGCGTGTGGCGTTTTCTCCAGGCCAT
GCCAAACGGTGTTGACAGCAGCCTTGCAGATCGCTTCTTTCCCAGTGGGGGATGAAAACT
TGGGTCAGAAATCCAGTAAGGCACACGGATTTCCTTCATTCCATCTCAGACCGGGGAAGA
AGGGTATCTTAAAGGGAAAAAAGCAGGGACCAGTGGTTTTCTGGGCAGATTTGCAAGGCT
GGCTTCTAAAAGAGCACAAGGAGATAAAGTGAAGAAAGGGCTGGACTACTGTAAAAGTTA
CAAATACATAGTTAGACCAATAGATTTATATAGTCACGTTTTTGTCATGTAATTTATTAA
CTATTACAAAAACACAACTAAAAGTATGAAGTATTTCTCTGGCTCTTG

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-468, gnl|bosTau2|chr24 (41833747-41834188)
               

               
               1-468, gnl|canFam2|chr1 (20162394-20161951)
               

               
               1-468, gnl|dasNov1|scaffold_5410 (38058-38491)
               

               
               1-468, gnl|echTel1|scaffold_221380 (15774-15334)
               

               
               1-468, gnl|hg17|chr18 (54803051-54803470)
               

               
               1-468, gnl|Hg17|chr18 (54803150-54803614)
               

               
               1-468, gnl|mm7|chr18 (66076936-66077334)
               

               
               1-468, gnl|Mm7|chr18 (66077033-66077479)
               

               
               1-468, gnl|monDom2|scaffold_20 (42849607-42849160)
               

               
               1-468, gnl|oryCun1|scaffold_196716 (4867-5305)
               

               
               1-468, gnl|panTro1|chr17 (51704212-51704638)
               

               
               1-468, gnl|rheMac2|chr18 (52268168-52268569)
               

               
               1-468, gnl|rn3|chr18 (62048639-62049037)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-468, gnl|bosTau2|chr24 (41833747-41834188)
               

               
               1-468, gnl|canFam2|chr1 (20162394-20161951)
               

               
               1-468, gnl|dasNov1|scaffold_5410 (38058-38491)
               

               
               1-468, gnl|echTel1|scaffold_221380 (15774-15334)
               

               
               1-468, gnl|hg17|chr18 (54803051-54803470)
               

               
               1-468, gnl|Hg17|chr18 (54803150-54803614)
               

               
               1-468, gnl|mm7|chr18 (66076936-66077334)
               

               
               1-468, gnl|Mm7|chr18 (66077033-66077479)
               

               
               1-468, gnl|monDom2|scaffold_20 (42849607-42849160)
               

               
               1-468, gnl|oryCun1|scaffold_196716 (4867-5305)
               

               
               1-468, gnl|panTro1|chr17 (51704212-51704638)
               

               
               1-468, gnl|rheMac2|chr18 (52268168-52268569)
               

               
               1-468, gnl|rn3|chr18 (62048639-62049037)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               vin (0.332557)
               

               
               ssp (0.271039)
               

               
               cut (0.169924)
               

               
               ldo (0.0970026)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               ssp (0.271039)
               

               
               cut (0.169924)
               

               
               ldo (0.0970026)

	1-468, gnl\|bosTau2\|chr24 (41833747-41834188)
	1-468, gnl\|canFam2\|chr1 (20162394-20161951)
	1-468, gnl\|dasNov1\|scaffold_5410 (38058-38491)
	1-468, gnl\|echTel1\|scaffold_221380 (15774-15334)
	1-468, gnl\|hg17\|chr18 (54803051-54803470)
	1-468, gnl\|Hg17\|chr18 (54803150-54803614)
	1-468, gnl\|mm7\|chr18 (66076936-66077334)
	1-468, gnl\|Mm7\|chr18 (66077033-66077479)
	1-468, gnl\|monDom2\|scaffold_20 (42849607-42849160)
	1-468, gnl\|oryCun1\|scaffold_196716 (4867-5305)
	1-468, gnl\|panTro1\|chr17 (51704212-51704638)
	1-468, gnl\|rheMac2\|chr18 (52268168-52268569)
	1-468, gnl\|rn3\|chr18 (62048639-62049037)