Non-Coding RNA Search

Ss1.1-rssp18_i23.5

Sequence:


               
               ACCAGATTGGCGCAGCAGGTTTAGACGGCTATGTGCTAGAGTATTGCTATGAAGGATGTA
AGTACAACTCAGTTAAAACGAATACCGTCATCAGTAGGTGAGATATGCACCCCCTTTTTT
GTTTCTCTTTCTTGGGAACTCCTCTCTTTCCTACTGAAAAGGACAGTAAGCCAAAGGTCA
TCCTTCTAAGATGGATAAAAATTTAGCTCTTCTTTGGTACTTGATGCTCACACTCTGAGC
TCTCAGAAGCATCCTAGCTAGGCTCCCAGATTGGATAACACGATTGATCCAAGAAATAGG
AGGAAGGGATCCTGACAAATCTCCCACTTCTCAAATTGGTGGAACTAAAAGCAAAATAAA
AGTTGAGTTAGGATAAAGCAAGTTGGAAATTCTAAACTCTGTGCTGAGCAGAGATCAGCT
ATCAACAGAGTTGCCTATTTCTGGATAATAAAGAGAGACTATGTATTTGACTATCTAGTA
ATCAGGTCCTGCCTTCCTAAAGAAAAAAAAAAAAAAAAGAAGAAGGACAACTTTTAGTGT
TTAAAGGAATCTGCATTAAATCCCAGAAGGTGTAAGAAATAGATTCAATATAGAGCAGTA
ACTAGTCTTAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCAGATTGGCGCAGCAGGTTTAGACGGCTATGTGCTAGAGTATTGCTATGAAGGATGTA
AGTACAACTCAGTTAAAACGAATACCGTCATCAGTAGGTGAGATATGCACCCCCTTTTTT
GTTTCTCTTTCTTGGGAACTCCTCTCTTTCCTACTGAAAAGGACAGTAAGCCAAAGGTCA
TCCTTCTAAGATGGATAAAAATTTAGCTCTTCTTTGGTACTTGATGCTCACACTCTGAGC
TCTCAGAAGCATCCTAGCTAGGCTCCCAGATTGGATAACACGATTGATCCAAGAAATAGG
AGGAAGGGATCCTGACAAATCTCCCACTTCTCAAATTGGTGGAACTAAAAGCAAAATAAA
AGTTGAGTTAGGATAAAGCAAGTTGGAAATTCTAAACTCTGTGCTGAGCAGAGATCAGCT
ATCAACAGAGTTGCCTATTTCTGGATAATAAAGAGAGACTATGTATTTGACTATCTAGTA
ATCAGGTCCTGCCTTCCTAAAGAAAAAAAAAAAAAAAAGAAGAAGGACAACTTTTAGTGT
TTAAAGGAATCTGCATTAAATCCCAGAAGGTGTAAGAAATAGATTCAATATAGAGCAGTA
ACTAGTCTTAGG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-601, gnl|bosTau2|chr5 (39968214-39967606)
               

               
               1-601, gnl|Hg17|chr12 (100559750-100560361)
               

               
               1-601, gnl|Mm7|chr10 (88098318-88097771)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-601, gnl|bosTau2|chr5 (39968214-39967606)
               

               
               1-601, gnl|Hg17|chr12 (100559750-100560361)
               

               
               1-601, gnl|Mm7|chr10 (88098318-88097771)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mas (0.210305)
               

               
               ssp (0.13552)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               ssp (0.13552)

	1-601, gnl\|bosTau2\|chr5 (39968214-39967606)
	1-601, gnl\|Hg17\|chr12 (100559750-100560361)
	1-601, gnl\|Mm7\|chr10 (88098318-88097771)