Non-Coding RNA Search

Ss1.1-rssp18_k16.5

Sequence:


               
               TTTTTGTAATCAAAATACCCAGCGTTTTCTACTTCCTCCCACTATCGTAGGTTCCTTTCC
TCCCTCCCTCTGGGCCACTGCCAGGAAACAGAGACGCTTAATCAGCAGCTTGACAAAGAA
CACCGAAGTCTTGGGAAGAAACCTTTTAATCACTCCCAGGTCCTGGGCAGCAGATGACCT
TCAAGTCACCTCGGCTCTCTGGGGAGATGGGAAGGCTCTCGCCTGGTCCCAGAGTGTTCC
TGTCCTTCCCAGGGGGCCCCACAAGGGTTTGGCTAAGAATAGGCGCTCGGGAGTTAACCC
TTTTAGGGAAGGACTGGCCCTTGGTGCTGCGAGGTCGTTTTTATTCACAGCTCTCTTTTT
TAGGGGATTTGCTACAGATATTTATAAGAAGTAATTCCATCTGTATGTACCATTGACCGT
TTGTACATAAAAAGCTGTGTGTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTGTAATCAAAATACCCAGCGTTTTCTACTTCCTCCCACTATCGTAGGTTCCTTTCC
TCCCTCCCTCTGGGCCACTGCCAGGAAACAGAGACGCTTAATCAGCAGCTTGACAAAGAA
CACCGAAGTCTTGGGAAGAAACCTTTTAATCACTCCCAGGTCCTGGGCAGCAGATGACCT
TCAAGTCACCTCGGCTCTCTGGGGAGATGGGAAGGCTCTCGCCTGGTCCCAGAGTGTTCC
TGTCCTTCCCAGGGGGCCCCACAAGGGTTTGGCTAAGAATAGGCGCTCGGGAGTTAACCC
TTTTAGGGAAGGACTGGCCCTTGGTGCTGCGAGGTCGTTTTTATTCACAGCTCTCTTTTT
TAGGGGATTTGCTACAGATATTTATAAGAAGTAATTCCATCTGTATGTACCATTGACCGT
TTGTACATAAAAAGCTGTGTGTCG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               345-443, + strand, RNAz p=0.52025

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               345-443, + strand, RNAz p=0.52025

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_198501, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_198501, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               152-443, gnl|bosTau2|chr19 (19678395-19678113)
               

               
               152-443, gnl|Hg17|chr17 (4458069-4458357)
               

               
               152-443, gnl|Mm7|chr11 (72472227-72471972)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               152-443, gnl|bosTau2|chr19 (19678395-19678113)
               

               
               152-443, gnl|Hg17|chr17 (4458069-4458357)
               

               
               152-443, gnl|Mm7|chr11 (72472227-72471972)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nms (0.641574)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.641574)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

	152-443, gnl\|bosTau2\|chr19 (19678395-19678113)
	152-443, gnl\|Hg17\|chr17 (4458069-4458357)
	152-443, gnl\|Mm7\|chr11 (72472227-72471972)

	nms (0.641574)
	lin (0.145603)
	ssp (0.13552)
	ese (0.126502)
	eru (0.120048)
	eje (0.0988338)