Ss1.1-rssp18_k5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTGCCATGAGCATCATGACTGAGATTGGAAACCGCCTGGGGCAGTGTGCAGGTGCTGCT GGGTGTGGCCAAGTGCTGGGTGGCCAGGAAGGCACTGGACAAGGCTCTGGATGCCATTGA AAGAGCCCAGGACCTGGCCGAGGAGGTGGGGAACAAGCTGGGTCAGCTCAAGCTGCACTG CCTGAGCGAGAGCATCTACCGCAGCAAAGGGCTGCAGCGGGAGCTGCGCGCGCACGTCGT GCGCTTCCACGAGTGCGTGGAGGAGACTGAGCTCTACTGCGGTCTGTGCGGCGAGTCCAT AGGAGAGAAGAACAGCCGGCTGCAGGCGCTGCCCTGCTCCCACATCTTCCACCTCCGGTG CCTGCAGAACAATGGGACGCGGAGCTGCCCCAACTGCCGCCGCTCATCCATGAAGCCTGG CTTTGTGTGACTCTGCCAGGCCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTGCCATGAGCATCATGACTGAGATTGGAAACCGCCTGGGGCAGTGTGCAGGTGCTGCT GGGTGTGGCCAAGTGCTGGGTGGCCAGGAAGGCACTGGACAAGGCTCTGGATGCCATTGA AAGAGCCCAGGACCTGGCCGAGGAGGTGGGGAACAAGCTGGGTCAGCTCAAGCTGCACTG CCTGAGCGAGAGCATCTACCGCAGCAAAGGGCTGCAGCGGGAGCTGCGCGCGCACGTCGT GCGCTTCCACGAGTGCGTGGAGGAGACTGAGCTCTACTGCGGTCTGTGCGGCGAGTCCAT AGGAGAGAAGAACAGCCGGCTGCAGGCGCTGCCCTGCTCCCACATCTTCCACCTCCGGTG CCTGCAGAACAATGGGACGCGGAGCTGCCCCAACTGCCGCCGCTCATCCATGAAGCCTGG CTTTGTGTGACTCTGCCAGGCCTC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 156-314, - strand, RNAz p=0.949656 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 156-314, - strand, RNAz p=0.949656 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 1-104, gnl|bosTau2|chr15 (48881933-48882035) | |
| 1-104, gnl|canFam2|chr18 (45242159-45242085) | |
| 1-104, gnl|danRer3|chr18 (25778612-25778545) | |
| 1-104, gnl|dasNov1|scaffold_290417 (1251-1325) | |
| 1-104, gnl|echTel1|scaffold_306857 (26771-26845) | |
| 1-104, gnl|fr1|chrUn (122391654-122391582) | |
| 1-104, gnl|galGal2|chr5 (20171402-20171336) | |
| 1-104, gnl|hg17|chr11 (47419728-47419801) | |
| 1-104, gnl|Hg17|chr11 (47419840-47419738) | |
| 1-104, gnl|loxAfr1|scaffold_11989 (40615-40689) | |
| 1-104, gnl|mm7|chr2 (90893992-90893918) | |
| 1-104, gnl|Mm7|chr2 (90893877-90893979) | |
| 1-104, gnl|monDom2|scaffold_33 (13298550-13298625) | |
| 1-104, gnl|oryCun1|scaffold_75548 (353-280) | |
| 1-104, gnl|panTro1|chr9_random (19856563-19856490) | |
| 1-104, gnl|rheMac2|chr14 (24673999-24673926) | |
| 1-104, gnl|rn3|chr3 (75300033-75299960) | |
| 1-104, gnl|tetNig1|chrUn_random (129492783-129492720) | |
| 1-104, gnl|xenTro1|scaffold_552 (58313-58247) | |
| 156-360, gnl|bosTau2|chr15 (48883678-48883882) | |
| 156-360, gnl|canFam2|chr18 (45244169-45243961) | |
| 156-360, gnl|danRer3|chr18 (25779851-25779643) | |
| 156-360, gnl|echTel1|scaffold_306857 (25520-25728) | |
| 156-360, gnl|fr1|chrUn (122392073-122391864) | |
| 156-360, gnl|galGal2|chr5 (20174956-20174751) | |
| 156-360, gnl|hg17|chr11 (47416858-47417066) | |
| 156-360, gnl|Hg17|chr11 (47417060-47416856) | |
| 156-360, gnl|loxAfr1|scaffold_11989 (38726-38932) | |
| 156-360, gnl|mm7|chr2 (90895758-90895550) | |
| 156-360, gnl|Mm7|chr2 (90895554-90895758) | |
| 156-360, gnl|monDom2|scaffold_33 (13295393-13295601) | |
| 156-360, gnl|panTro1|chr9 (47937221-47937429) | |
| 156-360, gnl|rn3|chr3 (75301835-75301627) | |
| 156-360, gnl|tetNig1|chrUn_random (129493202-129492993) | |
| 156-360, gnl|xenTro1|scaffold_552 (61076-60868) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-104, gnl|bosTau2|chr15 (48881933-48882035) | |
| 1-104, gnl|canFam2|chr18 (45242159-45242085) | |
| 1-104, gnl|danRer3|chr18 (25778612-25778545) | |
| 1-104, gnl|dasNov1|scaffold_290417 (1251-1325) | |
| 1-104, gnl|echTel1|scaffold_306857 (26771-26845) | |
| 1-104, gnl|fr1|chrUn (122391654-122391582) | |
| 1-104, gnl|galGal2|chr5 (20171402-20171336) | |
| 1-104, gnl|hg17|chr11 (47419728-47419801) | |
| 1-104, gnl|Hg17|chr11 (47419840-47419738) | |
| 1-104, gnl|loxAfr1|scaffold_11989 (40615-40689) | |
| 1-104, gnl|mm7|chr2 (90893992-90893918) | |
| 1-104, gnl|Mm7|chr2 (90893877-90893979) | |
| 1-104, gnl|monDom2|scaffold_33 (13298550-13298625) | |
| 1-104, gnl|oryCun1|scaffold_75548 (353-280) | |
| 1-104, gnl|panTro1|chr9_random (19856563-19856490) | |
| 1-104, gnl|rheMac2|chr14 (24673999-24673926) | |
| 1-104, gnl|rn3|chr3 (75300033-75299960) | |
| 1-104, gnl|tetNig1|chrUn_random (129492783-129492720) | |
| 1-104, gnl|xenTro1|scaffold_552 (58313-58247) | |
| 156-360, gnl|bosTau2|chr15 (48883678-48883882) | |
| 156-360, gnl|canFam2|chr18 (45244169-45243961) | |
| 156-360, gnl|danRer3|chr18 (25779851-25779643) | |
| 156-360, gnl|echTel1|scaffold_306857 (25520-25728) | |
| 156-360, gnl|fr1|chrUn (122392073-122391864) | |
| 156-360, gnl|galGal2|chr5 (20174956-20174751) | |
| 156-360, gnl|hg17|chr11 (47416858-47417066) | |
| 156-360, gnl|Hg17|chr11 (47417060-47416856) | |
| 156-360, gnl|loxAfr1|scaffold_11989 (38726-38932) | |
| 156-360, gnl|mm7|chr2 (90895758-90895550) | |
| 156-360, gnl|Mm7|chr2 (90895554-90895758) | |
| 156-360, gnl|monDom2|scaffold_33 (13295393-13295601) | |
| 156-360, gnl|panTro1|chr9 (47937221-47937429) | |
| 156-360, gnl|rn3|chr3 (75301835-75301627) | |
| 156-360, gnl|tetNig1|chrUn_random (129493202-129492993) | |
| 156-360, gnl|xenTro1|scaffold_552 (61076-60868) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ssp (0.13552) |