Non-Coding RNA Search

Ss1.1-rssp18_o12.5

Sequence:


               
               CCATACAAGACTCGAAGCCACTCAAAACAGCAGGAAGGATGGGCCTGCCCGCCTTTTGCA
CAGCTCCCTGTCTGCTGAGGAGGACCAGGGTCCCCTCCTCTACACCTGATGAAAGAAGTC
AGAGATGTAGCCTGGTGGGGCAGGGCGAAAGGCAGAGGGCCTTCCCTGTACTTGTGGCAT
AACCAGCCGCAGATGCGGAATAACCTGGCCCACTTGGCCCAGCGCTAAGCAAAACATGCA
TAGCTTGTAGAGGACCTCGTGACACTGCTTCTGAACACGCCTAAGGCATGGGAACCAGCA
ACAGCACATTTCTCACCTCAGCACCCATCCTCAGCAGGTCAACTCGGGGGGAGGAGGGCC
TGCCTCCTAGGAATGGGACATGAGGTCCCGACACTGGAGCTCCTGGGCAGATCTAAAAGC
ACAGGACTGAGCAGCAGTGCCCTGCTGGACAGTGTGGCCTGGGCCCTACGACCTAACTGG
GGGCCAGCACAGCTGAGTCACAATCAGGCTGGGCATCAGTCTACACTGCAGCACCTGAGT
TATTTGAATCCATGTGGTGAGAGGTGACTCCGAGATGCCATCTCATGCTCAGCCTGTACC
TCCTGTTTCTGTTCCTTCGTGATCTCCAAAAAAGTGTTCTGACCTCACTCTGAAGATACT
GTCCCATTTTGTCCTCCTACCTTCTCTCTGGAACTGGGGACTGATGGCCACACCAAGCCC
ACTGAAAGTCTTGTGTAAAGCAAACCAGTGATCATTTTAAGTGATATATCTGAGGGCCCC
AATTGTGCTAAAGCATAGTCTGTATCTTTACAGTGCTTTAGAATGTCTGTATGTGTGTAT
AAATGTATCATACATATTTATATATGTTGCTATAGCAGTATGTGTGTAAGCTAACATAAC
TGGTGGACAGGGTCAGGGAGAGAAAATGAAAACGTCTTGTTGGGGGCTATTAAAGGAAAA
TATGTATACAGAAATAAAATTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATACAAGACTCGAAGCCACTCAAAACAGCAGGAAGGATGGGCCTGCCCGCCTTTTGCA
CAGCTCCCTGTCTGCTGAGGAGGACCAGGGTCCCCTCCTCTACACCTGATGAAAGAAGTC
AGAGATGTAGCCTGGTGGGGCAGGGCGAAAGGCAGAGGGCCTTCCCTGTACTTGTGGCAT
AACCAGCCGCAGATGCGGAATAACCTGGCCCACTTGGCCCAGCGCTAAGCAAAACATGCA
TAGCTTGTAGAGGACCTCGTGACACTGCTTCTGAACACGCCTAAGGCATGGGAACCAGCA
ACAGCACATTTCTCACCTCAGCACCCATCCTCAGCAGGTCAACTCGGGGGGAGGAGGGCC
TGCCTCCTAGGAATGGGACATGAGGTCCCGACACTGGAGCTCCTGGGCAGATCTAAAAGC
ACAGGACTGAGCAGCAGTGCCCTGCTGGACAGTGTGGCCTGGGCCCTACGACCTAACTGG
GGGCCAGCACAGCTGAGTCACAATCAGGCTGGGCATCAGTCTACACTGCAGCACCTGAGT
TATTTGAATCCATGTGGTGAGAGGTGACTCCGAGATGCCATCTCATGCTCAGCCTGTACC
TCCTGTTTCTGTTCCTTCGTGATCTCCAAAAAAGTGTTCTGACCTCACTCTGAAGATACT
GTCCCATTTTGTCCTCCTACCTTCTCTCTGGAACTGGGGACTGATGGCCACACCAAGCCC
ACTGAAAGTCTTGTGTAAAGCAAACCAGTGATCATTTTAAGTGATATATCTGAGGGCCCC
AATTGTGCTAAAGCATAGTCTGTATCTTTACAGTGCTTTAGAATGTCTGTATGTGTGTAT
AAATGTATCATACATATTTATATATGTTGCTATAGCAGTATGTGTGTAAGCTAACATAAC
TGGTGGACAGGGTCAGGGAGAGAAAATGAAAACGTCTTGTTGGGGGCTATTAAAGGAAAA
TATGTATACAGAAATAAAATTTCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               21-246, - strand, RNAz p=0.857015
               

               
               858-976, + strand, RNAz p=0.742058

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               21-246, - strand, RNAz p=0.857015
               

               
               858-976, + strand, RNAz p=0.742058

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               21-976, gnl|bosTau2|chr3 (17941492-17940541)
               

               
               21-976, gnl|Hg17|chr1 (145847120-145848086)
               

               
               21-976, gnl|Mm7|chr3 (97562059-97561113)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               21-976, gnl|bosTau2|chr3 (17941492-17940541)
               

               
               21-976, gnl|Hg17|chr1 (145847120-145848086)
               

               
               21-976, gnl|Mm7|chr3 (97562059-97561113)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

Help | Less info


               
               nms (1.49701)
               

               
               ldo (1.26103)
               

               
               ssp (1.21968)
               

               
               che (1.09051)
               

               
               sme (0.91631)
               

               
               ste (0.676041)
               

               
               hea (0.613497)
               

               
               bfe (0.599431)
               

               
               aor (0.390549)
               

               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               mas (0.210305)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               hlv (0.139256)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (1.49701)
               

               
               ldo (1.26103)
               

               
               ssp (1.21968)
               

               
               che (1.09051)
               

               
               sme (0.91631)
               

               
               ste (0.676041)
               

               
               hea (0.613497)
               

               
               bfe (0.599431)
               

               
               aor (0.390549)
               

               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               mas (0.210305)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               hlv (0.139256)

	21-246, - strand, RNAz p=0.857015
	858-976, + strand, RNAz p=0.742058

	21-976, gnl\|bosTau2\|chr3 (17941492-17940541)
	21-976, gnl\|Hg17\|chr1 (145847120-145848086)
	21-976, gnl\|Mm7\|chr3 (97562059-97561113)

	nms (1.49701)
	ldo (1.26103)
	ssp (1.21968)
	che (1.09051)
	sme (0.91631)
	ste (0.676041)
	hea (0.613497)
	bfe (0.599431)
	aor (0.390549)
	vin (0.332557)
	tbr (0.308356)
	mas (0.210305)
	gul (0.177588)
	fbs (0.175346)
	fhi (0.169578)
	cli (0.152812)
	isp (0.150376)
	hlv (0.139256)