Non-Coding RNA Search

Ss1.1-rssp19_e13.5

Sequence:


               
               TGAAGTCTTACCTGTTGAGTGTACCTTGTGTAGCACCTTGCTTTTCTGAGCAAGCTGGAA
GGAGGCACGACCGGGCAGGTGTGTGTCTGAGTTACTCTGATAGGCCTCCTTCCAGAACGT
GCGTTGGATTTTGCATAGATCGCCAAGTGATATGAATGTAAAGAGAGTTGTGTATGTTGA
GGCGTAATGAAAATGTAAAATGCAGCTTCCATACTTGTGCATAATTCCAAAGTATTTTAT
TTTTTATCAGTGTTAAATAGCTTTTTGTACAGGCTTCAATCCATTTTCCTCAAGTGTGCT
GTTTTTTAATGAACGCAACTTTCAACTTTTCACATCCCATGGAACTGCTGTTTATGCGTC
GCAACTTTTTAAAACTTAACCATATTTTTCAAAATTAACTTTGTTTTGGAGGGAGGAGAA
TCCCCGCCTGCTGAATGATATTAAACTGTTGTTTAGGCCCTTCTGATTAGGTCCTGAGAT
TTTATAAAATTCAGTCTGTAACTAAGTTGGTTGTACATAAAGATAAAGAATATACAGTAA
CCTCACAGTTCTTTTAAATTTATGGATTTTTCCACTAATATGAACTTTTGAAGGTATTTT
GTTCATGCATACCATTAAATCCAAAAAGTCTTTAGCTTCTTGGTAAATGTGAACCCTTTG
TTTTCTATTGTGCTTTGGGGAAGGGACCTTTTAATATAATATTTACTTAAATCAAGCAGC
CCCTTCTGAATGTTCATTTTTAAATGTCAGCATTTGGTGAACCGTATATCTTGGAAGCAA
GATTACATATGCTTAAATTTAAGTGGTGTTTAAAATAGGAGAAAATTCTGGGACTGATTC
ATTATTATTAAAACTCCATTAATGCAATTGGTAAGACATTCTATTTTTGATCACTTAAAT
AGATTTCCATGTCAGTGTGTGGACATTTTTTCTTAAAACTCGTTCACATATTATTTTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAGTCTTACCTGTTGAGTGTACCTTGTGTAGCACCTTGCTTTTCTGAGCAAGCTGGAA
GGAGGCACGACCGGGCAGGTGTGTGTCTGAGTTACTCTGATAGGCCTCCTTCCAGAACGT
GCGTTGGATTTTGCATAGATCGCCAAGTGATATGAATGTAAAGAGAGTTGTGTATGTTGA
GGCGTAATGAAAATGTAAAATGCAGCTTCCATACTTGTGCATAATTCCAAAGTATTTTAT
TTTTTATCAGTGTTAAATAGCTTTTTGTACAGGCTTCAATCCATTTTCCTCAAGTGTGCT
GTTTTTTAATGAACGCAACTTTCAACTTTTCACATCCCATGGAACTGCTGTTTATGCGTC
GCAACTTTTTAAAACTTAACCATATTTTTCAAAATTAACTTTGTTTTGGAGGGAGGAGAA
TCCCCGCCTGCTGAATGATATTAAACTGTTGTTTAGGCCCTTCTGATTAGGTCCTGAGAT
TTTATAAAATTCAGTCTGTAACTAAGTTGGTTGTACATAAAGATAAAGAATATACAGTAA
CCTCACAGTTCTTTTAAATTTATGGATTTTTCCACTAATATGAACTTTTGAAGGTATTTT
GTTCATGCATACCATTAAATCCAAAAAGTCTTTAGCTTCTTGGTAAATGTGAACCCTTTG
TTTTCTATTGTGCTTTGGGGAAGGGACCTTTTAATATAATATTTACTTAAATCAAGCAGC
CCCTTCTGAATGTTCATTTTTAAATGTCAGCATTTGGTGAACCGTATATCTTGGAAGCAA
GATTACATATGCTTAAATTTAAGTGGTGTTTAAAATAGGAGAAAATTCTGGGACTGATTC
ATTATTATTAAAACTCCATTAATGCAATTGGTAAGACATTCTATTTTTGATCACTTAAAT
AGATTTCCATGTCAGTGTGTGGACATTTTTTCTTAAAACTCGTTCACATATTATTTTGAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-960, gnl|bosTau2|chr10 (4649161-4648183)
               

               
               1-960, gnl|Hg17|chr4 (160185777-160186757)
               

               
               1-960, gnl|Mm7|chrY_random (12719124-12720293)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-960, gnl|bosTau2|chr10 (4649161-4648183)
               

               
               1-960, gnl|Hg17|chr4 (160185777-160186757)
               

               
               1-960, gnl|Mm7|chrY_random (12719124-12720293)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

Help | Less info


               
               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               spl (0.143184)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)

	1-960, gnl\|bosTau2\|chr10 (4649161-4648183)
	1-960, gnl\|Hg17\|chr4 (160185777-160186757)
	1-960, gnl\|Mm7\|chrY_random (12719124-12720293)

	fce (0.271592)
	mgp (0.230681)
	tes (0.207814)
	sag (0.182715)
	tbr (0.154178)
	fat (0.147427)
	spl (0.143184)
	ssp (0.13552)
	ese (0.126502)