Non-Coding RNA Search

Ss1.1-rssp19_e19.5

Sequence:


               
               TACAGCTCGAAGGGAGTGAGAACAGTCATGTGTTCCAGCTCCAGGACGTTGTGCTCAGGA
ATTTGAAAACGCTGCTATACTTAGTCTGGTTACTACATTTCTTCCATTCCCCTCTGCCCC
TGCCTGCCTCACCAAGGCCCACACCCTCTTGTCGTCACCCTCAGATGGAGCCAGGAAGCC
CAGTTAAGGCTTCCCTCCCCTTTGCACTAGTGTCTCTGCAGGTTGCTGGTTGTGTTATAT
GTGCTGTTCCATGGTGTTGACTGCACTAATAATAAACCTTTTACTCAACTTGCTAAATTC
TTAATTCACATCACTCCCCTCATGAAGGTTCTCCTCTGCCTTGGCCTTTTCTCTCATCTT
AATTCCTCTGACATCTCCCTTGCTTTGTAACCTGCTCTTGTCATAGAACTAACCTCTCTT
TTGGAGGATGTCCATATGGGGGAGTGGGCACCACATCCTTCCTTCCTGTCTCCTGTTGTG
TACATCTGAAGTGATCTGCACTAGTGATCTGCACTTGGAGCAAAGGCCAACTTTTCAGGT
TGACCTTTGCTCCAAACCCGTGTCTTCCCTACGTGCTCTGGGATTTTGGGACACTTTCTG
TAGATGATATGCAAGTACCTTTCTCCCTTGTCCCACAAGCACCTTTGCTTTGGAATCCGG
GATTCCACTGCAGGCAGGGAAGCCTCCACCCCCGTTGTCTCCTAACCAAGACAGGAAACA
TGACGAAAGGAACCTGCAACTACTGTACCTGCTGTTTCTCAGACCTTGACTAAACCCTCT
TGTAGGCATTTGCTGCCACCTTTTCCCTGTCATGAGAAAAAAAAATTTGTACTGCAGTGC
TATATTTTAAACTTGTTGAGTATTTATCACGCACCTGATATAAACCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACAGCTCGAAGGGAGTGAGAACAGTCATGTGTTCCAGCTCCAGGACGTTGTGCTCAGGA
ATTTGAAAACGCTGCTATACTTAGTCTGGTTACTACATTTCTTCCATTCCCCTCTGCCCC
TGCCTGCCTCACCAAGGCCCACACCCTCTTGTCGTCACCCTCAGATGGAGCCAGGAAGCC
CAGTTAAGGCTTCCCTCCCCTTTGCACTAGTGTCTCTGCAGGTTGCTGGTTGTGTTATAT
GTGCTGTTCCATGGTGTTGACTGCACTAATAATAAACCTTTTACTCAACTTGCTAAATTC
TTAATTCACATCACTCCCCTCATGAAGGTTCTCCTCTGCCTTGGCCTTTTCTCTCATCTT
AATTCCTCTGACATCTCCCTTGCTTTGTAACCTGCTCTTGTCATAGAACTAACCTCTCTT
TTGGAGGATGTCCATATGGGGGAGTGGGCACCACATCCTTCCTTCCTGTCTCCTGTTGTG
TACATCTGAAGTGATCTGCACTAGTGATCTGCACTTGGAGCAAAGGCCAACTTTTCAGGT
TGACCTTTGCTCCAAACCCGTGTCTTCCCTACGTGCTCTGGGATTTTGGGACACTTTCTG
TAGATGATATGCAAGTACCTTTCTCCCTTGTCCCACAAGCACCTTTGCTTTGGAATCCGG
GATTCCACTGCAGGCAGGGAAGCCTCCACCCCCGTTGTCTCCTAACCAAGACAGGAAACA
TGACGAAAGGAACCTGCAACTACTGTACCTGCTGTTTCTCAGACCTTGACTAAACCCTCT
TGTAGGCATTTGCTGCCACCTTTTCCCTGTCATGAGAAAAAAAAATTTGTACTGCAGTGC
TATATTTTAAACTTGTTGAGTATTTATCACGCACCTGATATAAACCTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-197, - strand, RNAz p=0.615076
               

               
               567-758, - strand, RNAz p=0.935066

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-197, - strand, RNAz p=0.615076
               

               
               567-758, - strand, RNAz p=0.935066

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-887, gnl|bosTau2|chr5 (33427244-33428104)
               

               
               2-887, gnl|Hg17|chr12 (54884835-54883156)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-887, gnl|bosTau2|chr5 (33427244-33428104)
               

               
               2-887, gnl|Hg17|chr12 (54884835-54883156)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fce (0.271592)
               

               
               nms (0.213858)
               

               
               nlu (0.191681)
               

               
               ssp (0.13552)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               nms (0.213858)
               

               
               nlu (0.191681)
               

               
               ssp (0.13552)
               

               
               jca (0.11396)

	80-197, - strand, RNAz p=0.615076
	567-758, - strand, RNAz p=0.935066

	2-887, gnl\|bosTau2\|chr5 (33427244-33428104)
	2-887, gnl\|Hg17\|chr12 (54884835-54883156)

	fce (0.271592)
	nms (0.213858)
	nlu (0.191681)
	ssp (0.13552)
	jca (0.11396)