Ss1.1-rssp19_m12.5
|
GCCGGCGGCGGCGGCGGTACGAGGCGCGCGCTCGGGGTCCCGGTCGCGAGGAGGAGGAGG
ATGTGGCGCGCGGAGGGGAAATGGCTGCCGAAAACAAGCCGGAAGAGCGTTTCCCAAAGT
GTATTCTGCGGAGCTAGCACCTACTGTGTTCTCAACACCGTGCCGCCTCTAGAAGATGAT
CATGGGAACAGCAATAGTAGTCATGTAAAAATCTTTTTACCGAAAAAGCTGCTTGAATGT
CTGCCGAAATGTTCAAGTTTACCCAAAGAGAGGCACCGCTGGAACACTAATGAGAGATCA
TGATGCGGCCGCCCTTTGGGATTTCTTTTTAATAATGTGTGACCCTTCACCTTTGATCCC
CTGACCTGCATTACCTTGGTAACCATTTCATTTTTTAATTTCATTTCATTTTTTGATTTT
GGTGTACAAGCTGTAACATTTCATCTCTCAAAGTGTAACACGCTGATTTCCTCAAATAGA
GATACCCCTTTGAGCGATAAATTTGCAAAATGCTGTCTTCATTTTCTGTATTAAAATTCA
TTTCAGTTTTAAAAAAAAAAAAAAAATTTAAGCTGAACATTGCTAAAAATGAACTAGATT
AAAGTGACCCCGTCCTGCTTCATTCAGAGTCACTAGGAAGGCGATCTCCAGCCTGACCCA
GCTCGGGGAGCGTGGGTCTCTGTCCACCTGCCACCAGGTCCCAGTGGCCAGCCTGACCAG
CCACACGCCCAGATGCCACTCTCAGTCCCCTTAGCAAGCTGCTCTTTTCATCGGAGTGAT
GATCCGTGTGTTGGTTCCTGTCTGAATCCTTGAGAATGGACGCTCCAGGGGAGCGGGGCC
TCCATCGAGGCC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCCGGCGGCGGCGGCGGTACGAGGCGCGCGCTCGGGGTCCCGGTCGCGAGGAGGAGGAGG
ATGTGGCGCGCGGAGGGGAAATGGCTGCCGAAAACAAGCCGGAAGAGCGTTTCCCAAAGT
GTATTCTGCGGAGCTAGCACCTACTGTGTTCTCAACACCGTGCCGCCTCTAGAAGATGAT
CATGGGAACAGCAATAGTAGTCATGTAAAAATCTTTTTACCGAAAAAGCTGCTTGAATGT
CTGCCGAAATGTTCAAGTTTACCCAAAGAGAGGCACCGCTGGAACACTAATGAGAGATCA
TGATGCGGCCGCCCTTTGGGATTTCTTTTTAATAATGTGTGACCCTTCACCTTTGATCCC
CTGACCTGCATTACCTTGGTAACCATTTCATTTTTTAATTTCATTTCATTTTTTGATTTT
GGTGTACAAGCTGTAACATTTCATCTCTCAAAGTGTAACACGCTGATTTCCTCAAATAGA
GATACCCCTTTGAGCGATAAATTTGCAAAATGCTGTCTTCATTTTCTGTATTAAAATTCA
TTTCAGTTTTAAAAAAAAAAAAAAAATTTAAGCTGAACATTGCTAAAAATGAACTAGATT
AAAGTGACCCCGTCCTGCTTCATTCAGAGTCACTAGGAAGGCGATCTCCAGCCTGACCCA
GCTCGGGGAGCGTGGGTCTCTGTCCACCTGCCACCAGGTCCCAGTGGCCAGCCTGACCAG
CCACACGCCCAGATGCCACTCTCAGTCCCCTTAGCAAGCTGCTCTTTTCATCGGAGTGAT
GATCCGTGTGTTGGTTCCTGTCTGAATCCTTGAGAATGGACGCTCCAGGGGAGCGGGGCC
TCCATCGAGGCC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
293-559, gnl|bosTau2|chr16 (34273537-34273271) |
|
293-559, gnl|Hg17|chr1 (6866081-6866346) |
|
293-559, gnl|Mm7|chr4 (150782046-150781781) |
| |
|
565-839, gnl|bosTau2|chr16 (34261149-34260878) |
|
565-839, gnl|canFam2|chr5 (63673120-63673418) |
|
565-839, gnl|dasNov1|scaffold_152487 (4497-4777) |
|
565-839, gnl|echTel1|scaffold_295352 (60746-60435) |
|
565-839, gnl|hg17|chr1 (6882102-6882410) |
|
565-839, gnl|Hg17|chr1 (6882168-6882443) |
|
565-839, gnl|loxAfr1|scaffold_70068 (9650-9334) |
|
565-839, gnl|mm7|chr4 (150770357-150770125) |
|
565-839, gnl|Mm7|chr4 (150770291-150770059) |
|
565-839, gnl|oryCun1|scaffold_162967 (965-1250) |
|
565-839, gnl|panTro1|chr1 (6850333-6850641) |
|
565-839, gnl|rheMac2|chr1 (9918493-9918801) |
|
565-839, gnl|rn3|chr5 (168998945-168998690) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
293-559, gnl|bosTau2|chr16 (34273537-34273271) |
|
293-559, gnl|Hg17|chr1 (6866081-6866346) |
|
293-559, gnl|Mm7|chr4 (150782046-150781781) |
| |
|
565-839, gnl|bosTau2|chr16 (34261149-34260878) |
|
565-839, gnl|canFam2|chr5 (63673120-63673418) |
|
565-839, gnl|dasNov1|scaffold_152487 (4497-4777) |
|
565-839, gnl|echTel1|scaffold_295352 (60746-60435) |
|
565-839, gnl|hg17|chr1 (6882102-6882410) |
|
565-839, gnl|Hg17|chr1 (6882168-6882443) |
|
565-839, gnl|loxAfr1|scaffold_70068 (9650-9334) |
|
565-839, gnl|mm7|chr4 (150770357-150770125) |
|
565-839, gnl|Mm7|chr4 (150770291-150770059) |
|
565-839, gnl|oryCun1|scaffold_162967 (965-1250) |
|
565-839, gnl|panTro1|chr1 (6850333-6850641) |
|
565-839, gnl|rheMac2|chr1 (9918493-9918801) |
|
565-839, gnl|rn3|chr5 (168998945-168998690) |
|
sme (0.305437) |
|
fat (0.294855) |
|
fce (0.271592) |
|
ova (0.258264) |
|
col (0.195008) |
|
sag (0.182715) |
|
mgm (0.180343) |
|
fbs (0.175346) |
|
rec (0.17307) |
|
duo (0.172801) |
|
cje (0.165235) |
|
fco (0.157208) |
|
pty (0.142714) |
|
nca (0.136874) |
|
ssp (0.13552) |
|
sug (0.127291) |
|
ese (0.126502) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
jca (0.11396) |
|
spc (0.113366) |
|
cty (0.10408) |
|
sme (0.305437) |
|
fat (0.294855) |
|
fce (0.271592) |
|
ova (0.258264) |
|
col (0.195008) |
|
sag (0.182715) |
|
mgm (0.180343) |
|
fbs (0.175346) |
|
rec (0.17307) |
|
duo (0.172801) |
|
cje (0.165235) |
|
fco (0.157208) |
|
pty (0.142714) |
|
nca (0.136874) |
|
ssp (0.13552) |
|
sug (0.127291) |
|
ese (0.126502) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
jca (0.11396) |
|
spc (0.113366) |
|
cty (0.10408) |
