Non-Coding RNA Search

Ss1.1-rssp21_j13.5

Sequence:


               
               ACAGGTGGGGAAGCCAAGGCCTAAAGAGGTCATGTGACTAGATACCAGCTAGTGGACTCA
ACTTTTCCACTGGACTTCTTGCATTGCCTAATCTAGCAACTGATATAAGGACAGTTTTGA
GGGGTAGGACGAAGTCTGTGGGGACAATCTTTGAAGGAAAGAATTTGACAAAGTTAGAAC
AAGTAAACAATATAAGTCATGTATTACACTGAACAAGAAGAAATTCTTGTTTTTGTAGGT
CAAAATAATTATCAATTTCACATGGTTCAATCTAATGTATAATATTATACTTTCCCTCTT
TCAATGGAAATGTCATCATTAATTCTATTGTCAAAATCAGTAGCCTGAAAATACCATGAT
AATGATAACTACCATTTATTAAAAGCCTACTATGTCTTGGGAGTGATACTGAGCACTTTA
CACGCATTATGCCAATCTTTCTATTCACTCTGAGTTAGGTGGCCTTCCCCCTTTACTAGA
CACATCTTCAAAGCAGTTAAATGGTTAGTCTGAAGGCACCTAACCCATACAGGTGTCTGG
CTCCAATGCCTGTGTTCTGTCTACTCCTTCATACAAAATTTTCAGAACATAGAGACGAAC
CAAGGTTAGTAAATAATTTTCATCTCAAAGGCTAAACATAATTGATTGGCACACGCTGCC
TAGAGTGCTGGGAAGCTGGAATCTACCTATTAGAGTATCCTATGACTATTTATCTTATTT
ACTTTAGAGCTAATGTCCTTCTATTTATATATGGCAGCTGGGGGTCCATGTAGGATGGAG
CTTATTTATTTTTTAATTTGATTATTTCATGATGAAGTGTTTGCCTTGTACAGAACATTT
TAATTGGCCAATTTTAATAAAAATAAAGTATGCTTTGTTTGTGACATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGGTGGGGAAGCCAAGGCCTAAAGAGGTCATGTGACTAGATACCAGCTAGTGGACTCA
ACTTTTCCACTGGACTTCTTGCATTGCCTAATCTAGCAACTGATATAAGGACAGTTTTGA
GGGGTAGGACGAAGTCTGTGGGGACAATCTTTGAAGGAAAGAATTTGACAAAGTTAGAAC
AAGTAAACAATATAAGTCATGTATTACACTGAACAAGAAGAAATTCTTGTTTTTGTAGGT
CAAAATAATTATCAATTTCACATGGTTCAATCTAATGTATAATATTATACTTTCCCTCTT
TCAATGGAAATGTCATCATTAATTCTATTGTCAAAATCAGTAGCCTGAAAATACCATGAT
AATGATAACTACCATTTATTAAAAGCCTACTATGTCTTGGGAGTGATACTGAGCACTTTA
CACGCATTATGCCAATCTTTCTATTCACTCTGAGTTAGGTGGCCTTCCCCCTTTACTAGA
CACATCTTCAAAGCAGTTAAATGGTTAGTCTGAAGGCACCTAACCCATACAGGTGTCTGG
CTCCAATGCCTGTGTTCTGTCTACTCCTTCATACAAAATTTTCAGAACATAGAGACGAAC
CAAGGTTAGTAAATAATTTTCATCTCAAAGGCTAAACATAATTGATTGGCACACGCTGCC
TAGAGTGCTGGGAAGCTGGAATCTACCTATTAGAGTATCCTATGACTATTTATCTTATTT
ACTTTAGAGCTAATGTCCTTCTATTTATATATGGCAGCTGGGGGTCCATGTAGGATGGAG
CTTATTTATTTTTTAATTTGATTATTTCATGATGAAGTGTTTGCCTTGTACAGAACATTT
TAATTGGCCAATTTTAATAAAAATAAAGTATGCTTTGTTTGTGACATA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-633, gnl|bosTau2|chr14 (19163538-19162903)
               

               
               1-633, gnl|Hg17|chr8 (67591631-67592315)
               

               
               1-633, gnl|Mm7|chr1 (9768362-9769079)
               


               
               685-887, gnl|bosTau2|chr14 (19162172-19161967)
               

               
               685-887, gnl|Hg17|chr8 (67592951-67593297)
               

               
               685-887, gnl|Mm7|chr1 (9769652-9769847)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-633, gnl|bosTau2|chr14 (19163538-19162903)
               

               
               1-633, gnl|Hg17|chr8 (67591631-67592315)
               

               
               1-633, gnl|Mm7|chr1 (9768362-9769079)
               


               
               685-887, gnl|bosTau2|chr14 (19162172-19161967)
               

               
               685-887, gnl|Hg17|chr8 (67592951-67593297)
               

               
               685-887, gnl|Mm7|chr1 (9769652-9769847)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fce (0.271592)
               

               
               ssp (0.13552)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ssp (0.13552)

	1-633, gnl\|bosTau2\|chr14 (19163538-19162903)
	1-633, gnl\|Hg17\|chr8 (67591631-67592315)
	1-633, gnl\|Mm7\|chr1 (9768362-9769079)

	685-887, gnl\|bosTau2\|chr14 (19162172-19161967)
	685-887, gnl\|Hg17\|chr8 (67592951-67593297)
	685-887, gnl\|Mm7\|chr1 (9769652-9769847)