Ss1.1-rssp22_b4.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATTGATGTGGCAGAGAGAGATGACTCTGGTGTTTACAACATAAGTCTGAAAAATGAAGC CGGGGAAGCACATGCAAGCATCAAGGTTAAAGTTGTGGACATCCCTGATCCTCCCGTAGC GCCGAATGTGAAAGAAGTAGGAGATGACTGGTGCATCATGACCTGGGACCCTCCTCTCTA TGACGGAGGGTCGCCAATCTTAGGATACTTCATTGAGAGGAAAAAGAAACAGAGCTCCAG GTGGATGAGGCTGAATTTTGATCTCTGCAAAGAAACAACCTTTGAGCCCAAGAAGATGAT TGAAGGTGTGGCCTATGAGGTCCGCATCTTTGCTGTCAATGCCGTTGGCATCTCCAAGCC CAGTATGCCATCGAGGCCTTTTGTTCCATTGGCTGTCACCAGCCCTCCTACTCTTCTGGC TGTTGACTCCGTAACTGACACCACTGTCACAATGAAGTGGCGGCCCCCGGACCAGATTGG CGCAGCAGGTTTAGACGGCTATGTGCTAGAGTATTGCTATGAAGGATCTGACAACTGGTT GCCTGCACACAAAGACTTGATCGACAAGACCAAGTTCACCATCACAGATCTGCCTACGGA TGCAAAGATCTTTGTGCGTGTGAAGGCTGTGAATGCTGCCGGCGCCAGCGAGCCCAAGTA CTACTCTCAGCCAATCCTCGTGAAGCAAATCATAGAGCCTCCAAAGATTCGCATCCCAAG GCACCTGAAACAGACCTATATCCGCAGAGTTGGAGAAGCCATCAATCTGGTTATACCTTT CCAGGGTAAACCAAAACCAGAATTAACTTGGAAGAAGGATGGTAAAGAAATCGATAAGAA TCAGATAAACATTCGCAACTCGGAGACTGATTCGATCATATTTATCAGAAAAGCAGAGAG GAGCCACTCTGGGAAATATGATCTGGAGGTCAAAGTGGAAAAATTCATGGAAACCGCGTC CATCGATATCCAGGTTGTTGACCGTCCGGGTCCACCTCAAGTCGTGAAGATCGACGACGT CTGGGGAGAGAACGTGGCTCTGTCGTGGACACCACCAAAGGATGATGGGAATGCTGCCAT CACAGGGTACACGATCCAGAAGGCCGACAAGAAGAGCATGGAGTGGTTCACCGTCATTGA GCATTATCACCGAACCAGTGCCACCATTTCTGAACTGGTCATAGGAAACGAATATTACTT CCGGGTCTTTTCTGAAAACATGTGCGGCCTCAGTGAGGATGCCACGATGACCAAAGAGAG CGCCGTGATTGCCAAAGATGGGAAAATCTACAAAAATCCAGTGTATGAAGACTTCGATTT CACAGAGGCACCCATGTTTACTCAACCTTTGGTCAATACTTACGCTGTAGCTGGTTACAA TGCTACCCTGAACTGCAGTGTGAGAGGAAATCCTAAGCCCAAAATCACCTGGATGAAAAA CAAAGTGACTATTAAGGATGACCCAAGATACAGGATGTTCAGCAACCAAGGGGTCTGTAC TCTGGAGATTCGCAAGCCCAGCCCCTATGATGGAGGCACTTACTGCTGCAAAGCAGTCAA TGACCTTGGGACGGTAGAGATCGAATGCAAACTGGAGGTGAAAGTTGTAGCACAGTAAGG ATGTTTGAATGTATATTATCATCTAAGGTGGCCTTTCCTTCTGCAGGCTCCTCTTGCAAG GCGTGCCTCCTAACATAATTGATTCATATTTGCGAGACTTGCAATCAAGCAATCCTGAGG AATACTAAGGGCCTGTGCCCCGCTTCTCTGCCCTCCACTGCTCTGAAATCGGGTTGCAGT GAGAAAGCATTTCTGTTTTCCCACCAGGCTCCCAAAGTGTGTTTTCTTTCCTCCCCATAT TGAAGAAAAAAAAGAGAAATGTTTGCACGGATGGCTTCATTAAAAATTGCAAACAAACTT TTATTTGAAGTTAGCATTTTGTTGTCTGTGCTTGGTCACTGTACTTTCCCAAGGAAGCAA GTTATAGAATAAGCAAAAGCAGTTATTTCAGTTTAAAACAATAGGCTCTAAATGTTTTTT TTTCCTAGATTAAAAAAAAAAAAAAAGGTACACTATACTATCATCTCGAAAACCCAGCTT TCTCTGGATCTAAGAGATTTTTCTAAGCAAAGAAGAGCTATTTATTTCACACAGCCCTGC CTAATACCAGGGGATCTGTAGCCCTTTTCCCATTTAAACTCATTACAAGATTTTTTTAAG TCTTTCAGACAAGTCTTCTCAGCAGAAGGGAAAATGTATTCAATAAATGGCACAATAAAT TGAAGTGTTGAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATTGATGTGGCAGAGAGAGATGACTCTGGTGTTTACAACATAAGTCTGAAAAATGAAGC CGGGGAAGCACATGCAAGCATCAAGGTTAAAGTTGTGGACATCCCTGATCCTCCCGTAGC GCCGAATGTGAAAGAAGTAGGAGATGACTGGTGCATCATGACCTGGGACCCTCCTCTCTA TGACGGAGGGTCGCCAATCTTAGGATACTTCATTGAGAGGAAAAAGAAACAGAGCTCCAG GTGGATGAGGCTGAATTTTGATCTCTGCAAAGAAACAACCTTTGAGCCCAAGAAGATGAT TGAAGGTGTGGCCTATGAGGTCCGCATCTTTGCTGTCAATGCCGTTGGCATCTCCAAGCC CAGTATGCCATCGAGGCCTTTTGTTCCATTGGCTGTCACCAGCCCTCCTACTCTTCTGGC TGTTGACTCCGTAACTGACACCACTGTCACAATGAAGTGGCGGCCCCCGGACCAGATTGG CGCAGCAGGTTTAGACGGCTATGTGCTAGAGTATTGCTATGAAGGATCTGACAACTGGTT GCCTGCACACAAAGACTTGATCGACAAGACCAAGTTCACCATCACAGATCTGCCTACGGA TGCAAAGATCTTTGTGCGTGTGAAGGCTGTGAATGCTGCCGGCGCCAGCGAGCCCAAGTA CTACTCTCAGCCAATCCTCGTGAAGCAAATCATAGAGCCTCCAAAGATTCGCATCCCAAG GCACCTGAAACAGACCTATATCCGCAGAGTTGGAGAAGCCATCAATCTGGTTATACCTTT CCAGGGTAAACCAAAACCAGAATTAACTTGGAAGAAGGATGGTAAAGAAATCGATAAGAA TCAGATAAACATTCGCAACTCGGAGACTGATTCGATCATATTTATCAGAAAAGCAGAGAG GAGCCACTCTGGGAAATATGATCTGGAGGTCAAAGTGGAAAAATTCATGGAAACCGCGTC CATCGATATCCAGGTTGTTGACCGTCCGGGTCCACCTCAAGTCGTGAAGATCGACGACGT CTGGGGAGAGAACGTGGCTCTGTCGTGGACACCACCAAAGGATGATGGGAATGCTGCCAT CACAGGGTACACGATCCAGAAGGCCGACAAGAAGAGCATGGAGTGGTTCACCGTCATTGA GCATTATCACCGAACCAGTGCCACCATTTCTGAACTGGTCATAGGAAACGAATATTACTT CCGGGTCTTTTCTGAAAACATGTGCGGCCTCAGTGAGGATGCCACGATGACCAAAGAGAG CGCCGTGATTGCCAAAGATGGGAAAATCTACAAAAATCCAGTGTATGAAGACTTCGATTT CACAGAGGCACCCATGTTTACTCAACCTTTGGTCAATACTTACGCTGTAGCTGGTTACAA TGCTACCCTGAACTGCAGTGTGAGAGGAAATCCTAAGCCCAAAATCACCTGGATGAAAAA CAAAGTGACTATTAAGGATGACCCAAGATACAGGATGTTCAGCAACCAAGGGGTCTGTAC TCTGGAGATTCGCAAGCCCAGCCCCTATGATGGAGGCACTTACTGCTGCAAAGCAGTCAA TGACCTTGGGACGGTAGAGATCGAATGCAAACTGGAGGTGAAAGTTGTAGCACAGTAAGG ATGTTTGAATGTATATTATCATCTAAGGTGGCCTTTCCTTCTGCAGGCTCCTCTTGCAAG GCGTGCCTCCTAACATAATTGATTCATATTTGCGAGACTTGCAATCAAGCAATCCTGAGG AATACTAAGGGCCTGTGCCCCGCTTCTCTGCCCTCCACTGCTCTGAAATCGGGTTGCAGT GAGAAAGCATTTCTGTTTTCCCACCAGGCTCCCAAAGTGTGTTTTCTTTCCTCCCCATAT TGAAGAAAAAAAAGAGAAATGTTTGCACGGATGGCTTCATTAAAAATTGCAAACAAACTT TTATTTGAAGTTAGCATTTTGTTGTCTGTGCTTGGTCACTGTACTTTCCCAAGGAAGCAA GTTATAGAATAAGCAAAAGCAGTTATTTCAGTTTAAAACAATAGGCTCTAAATGTTTTTT TTTCCTAGATTAAAAAAAAAAAAAAAGGTACACTATACTATCATCTCGAAAACCCAGCTT TCTCTGGATCTAAGAGATTTTTCTAAGCAAAGAAGAGCTATTTATTTCACACAGCCCTGC CTAATACCAGGGGATCTGTAGCCCTTTTCCCATTTAAACTCATTACAAGATTTTTTTAAG TCTTTCAGACAAGTCTTCTCAGCAGAAGGGAAAATGTATTCAATAAATGGCACAATAAAT TGAAGTGTTGAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 818-980, - strand, RNAz p=0.927055 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 818-980, - strand, RNAz p=0.927055 |
| Aligned organism(s): 65 entry(ies) | More info |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
| 202-395, gnl|bosTau2|chr5 (39969332-39969139) | |
| 202-395, gnl|canFam2|chr15 (43576506-43576725) | |
| 202-395, gnl|danRer3|chr4 (19139976-19139760) | |
| 202-395, gnl|dasNov1|scaffold_8886 (11805-12024) | |
| 202-395, gnl|echTel1|scaffold_313959 (161276-161494) | |
| 202-395, gnl|fr1|chrUn (212013444-212013653) | |
| 202-395, gnl|galGal2|chr1 (52314929-52314706) | |
| 202-395, gnl|hg17|chr12 (100558584-100558802) | |
| 202-395, gnl|Hg17|chr12 (100558602-100558795) | |
| 202-395, gnl|loxAfr1|scaffold_604 (154768-154987) | |
| 202-395, gnl|mm7|chr10 (88099851-88099633) | |
| 202-395, gnl|Mm7|chr10 (88099831-88099638) | |
| 202-395, gnl|monDom2|scaffold_34 (11715397-11715178) | |
| 202-395, gnl|oryCun1|scaffold_117467 (6671-6453) | |
| 202-395, gnl|panTro1|chr10 (103014237-103014455) | |
| 202-395, gnl|rheMac2|chr11 (102859408-102859626) | |
| 202-395, gnl|rn3|chr7 (25256417-25256200) | |
| 202-395, gnl|tetNig1|chr19 (1606030-1606241) | |
| 202-395, gnl|xenTro1|scaffold_230 (325452-325239) | |
| 528-695, gnl|bosTau2|chr5 (39963793-39963626) | |
| 528-695, gnl|canFam2|chr15 (43581934-43582120) | |
| 528-695, gnl|danRer3|chr4 (19136743-19136568) | |
| 528-695, gnl|dasNov1|scaffold_8886 (17712-17897) | |
| 528-695, gnl|echTel1|scaffold_175468 (1173-988) | |
| 528-695, gnl|fr1|chrUn (212014307-212014485) | |
| 528-695, gnl|galGal2|chr1 (52308762-52308578) | |
| 528-695, gnl|hg17|chr12 (100563971-100564156) | |
| 528-695, gnl|Hg17|chr12 (100563978-100564145) | |
| 528-695, gnl|loxAfr1|scaffold_604 (160482-160667) | |
| 528-695, gnl|mm7|chr7 (40681477-40681294) | |
| 528-695, gnl|monDom2|scaffold_34 (11705238-11705060) | |
| 528-695, gnl|oryCun1|scaffold_203776 (175586-175771) | |
| 528-695, gnl|panTro1|chr10 (103020336-103020521) | |
| 528-695, gnl|rheMac2|chr11 (102864800-102864985) | |
| 528-695, gnl|rn3|chr7 (25250704-25250519) | |
| 528-695, gnl|tetNig1|chr19 (1606931-1607106) | |
| 528-695, gnl|xenTro1|scaffold_230 (316528-316346) | |
| 778-980, gnl|bosTau2|chr5 (39957652-39957450) | |
| 778-980, gnl|Hg17|chr12 (100569667-100569868) | |
| 778-980, gnl|Mm7|chr10 (88089764-88089562) | |
| 1120-1281, gnl|bosTau2|chr5 (39946667-39946506) | |
| 1120-1281, gnl|canFam2|chr15 (43592457-43592643) | |
| 1120-1281, gnl|danRer3|chr4 (19133445-19133272) | |
| 1120-1281, gnl|dasNov1|scaffold_8886 (28920-29105) | |
| 1120-1281, gnl|echTel1|scaffold_279622 (38868-38721) | |
| 1120-1281, gnl|fr1|chrUn (212015315-212015464) | |
| 1120-1281, gnl|galGal2|chr1 (52304979-52304803) | |
| 1120-1281, gnl|hg17|chr12 (100573472-100573659) | |
| 1120-1281, gnl|Hg17|chr12 (100573480-100573641) | |
| 1120-1281, gnl|loxAfr1|scaffold_1180 (126007-125829) | |
| 1120-1281, gnl|mm7|chr10 (88084366-88084174) | |
| 1120-1281, gnl|Mm7|chr10 (88084351-88084190) | |
| 1120-1281, gnl|monDom2|scaffold_34 (11694798-11694610) | |
| 1120-1281, gnl|oryCun1|scaffold_206851 (91632-91760) | |
| 1120-1281, gnl|panTro1|chr10_random (181180-180993) | |
| 1120-1281, gnl|rheMac2|chr11 (102874484-102874673) | |
| 1120-1281, gnl|rn3|chr7 (25242792-25242604) | |
| 1120-1281, gnl|tetNig1|chr19 (1607882-1608047) | |
| 1120-1281, gnl|xenTro1|scaffold_230 (314246-314068) | |
| 1416-1642, gnl|bosTau2|chr16 (2334273-2334045) | |
| 1416-1642, gnl|Hg17|chr1 (199869879-199869676) | |
| 1416-1642, gnl|Mm7|chr1 (134089733-134089955) | |
| 2089-2292, gnl|bosTau2|chr5 (39938369-39938164) | |
| 2089-2292, gnl|Hg17|chr12 (100582291-100582483) | |
| 2089-2292, gnl|Mm7|chr10 (88076010-88075678) |
| Aligned organism(s): 65 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 202-395, gnl|bosTau2|chr5 (39969332-39969139) | |
| 202-395, gnl|canFam2|chr15 (43576506-43576725) | |
| 202-395, gnl|danRer3|chr4 (19139976-19139760) | |
| 202-395, gnl|dasNov1|scaffold_8886 (11805-12024) | |
| 202-395, gnl|echTel1|scaffold_313959 (161276-161494) | |
| 202-395, gnl|fr1|chrUn (212013444-212013653) | |
| 202-395, gnl|galGal2|chr1 (52314929-52314706) | |
| 202-395, gnl|hg17|chr12 (100558584-100558802) | |
| 202-395, gnl|Hg17|chr12 (100558602-100558795) | |
| 202-395, gnl|loxAfr1|scaffold_604 (154768-154987) | |
| 202-395, gnl|mm7|chr10 (88099851-88099633) | |
| 202-395, gnl|Mm7|chr10 (88099831-88099638) | |
| 202-395, gnl|monDom2|scaffold_34 (11715397-11715178) | |
| 202-395, gnl|oryCun1|scaffold_117467 (6671-6453) | |
| 202-395, gnl|panTro1|chr10 (103014237-103014455) | |
| 202-395, gnl|rheMac2|chr11 (102859408-102859626) | |
| 202-395, gnl|rn3|chr7 (25256417-25256200) | |
| 202-395, gnl|tetNig1|chr19 (1606030-1606241) | |
| 202-395, gnl|xenTro1|scaffold_230 (325452-325239) | |
| 528-695, gnl|bosTau2|chr5 (39963793-39963626) | |
| 528-695, gnl|canFam2|chr15 (43581934-43582120) | |
| 528-695, gnl|danRer3|chr4 (19136743-19136568) | |
| 528-695, gnl|dasNov1|scaffold_8886 (17712-17897) | |
| 528-695, gnl|echTel1|scaffold_175468 (1173-988) | |
| 528-695, gnl|fr1|chrUn (212014307-212014485) | |
| 528-695, gnl|galGal2|chr1 (52308762-52308578) | |
| 528-695, gnl|hg17|chr12 (100563971-100564156) | |
| 528-695, gnl|Hg17|chr12 (100563978-100564145) | |
| 528-695, gnl|loxAfr1|scaffold_604 (160482-160667) | |
| 528-695, gnl|mm7|chr7 (40681477-40681294) | |
| 528-695, gnl|monDom2|scaffold_34 (11705238-11705060) | |
| 528-695, gnl|oryCun1|scaffold_203776 (175586-175771) | |
| 528-695, gnl|panTro1|chr10 (103020336-103020521) | |
| 528-695, gnl|rheMac2|chr11 (102864800-102864985) | |
| 528-695, gnl|rn3|chr7 (25250704-25250519) | |
| 528-695, gnl|tetNig1|chr19 (1606931-1607106) | |
| 528-695, gnl|xenTro1|scaffold_230 (316528-316346) | |
| 778-980, gnl|bosTau2|chr5 (39957652-39957450) | |
| 778-980, gnl|Hg17|chr12 (100569667-100569868) | |
| 778-980, gnl|Mm7|chr10 (88089764-88089562) | |
| 1120-1281, gnl|bosTau2|chr5 (39946667-39946506) | |
| 1120-1281, gnl|canFam2|chr15 (43592457-43592643) | |
| 1120-1281, gnl|danRer3|chr4 (19133445-19133272) | |
| 1120-1281, gnl|dasNov1|scaffold_8886 (28920-29105) | |
| 1120-1281, gnl|echTel1|scaffold_279622 (38868-38721) | |
| 1120-1281, gnl|fr1|chrUn (212015315-212015464) | |
| 1120-1281, gnl|galGal2|chr1 (52304979-52304803) | |
| 1120-1281, gnl|hg17|chr12 (100573472-100573659) | |
| 1120-1281, gnl|Hg17|chr12 (100573480-100573641) | |
| 1120-1281, gnl|loxAfr1|scaffold_1180 (126007-125829) | |
| 1120-1281, gnl|mm7|chr10 (88084366-88084174) | |
| 1120-1281, gnl|Mm7|chr10 (88084351-88084190) | |
| 1120-1281, gnl|monDom2|scaffold_34 (11694798-11694610) | |
| 1120-1281, gnl|oryCun1|scaffold_206851 (91632-91760) | |
| 1120-1281, gnl|panTro1|chr10_random (181180-180993) | |
| 1120-1281, gnl|rheMac2|chr11 (102874484-102874673) | |
| 1120-1281, gnl|rn3|chr7 (25242792-25242604) | |
| 1120-1281, gnl|tetNig1|chr19 (1607882-1608047) | |
| 1120-1281, gnl|xenTro1|scaffold_230 (314246-314068) | |
| 1416-1642, gnl|bosTau2|chr16 (2334273-2334045) | |
| 1416-1642, gnl|Hg17|chr1 (199869879-199869676) | |
| 1416-1642, gnl|Mm7|chr1 (134089733-134089955) | |
| 2089-2292, gnl|bosTau2|chr5 (39938369-39938164) | |
| 2089-2292, gnl|Hg17|chr12 (100582291-100582483) | |
| 2089-2292, gnl|Mm7|chr10 (88076010-88075678) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| tbr (4.62535) | |
| ssp (4.47215) | |
| isp (4.06015) | |
| ste (3.92104) | |
| ldo (2.61907) | |
| mas (2.52366) | |
| nms (2.35244) | |
| vin (1.99534) | |
| bfe (1.34872) | |
| ton (0.877501) | |
| ctl (0.612276) | |
| ese (0.379507) | |
| eye (0.170503) | |
| cki (0.165235) | |
| jca (0.11396) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (4.62535) | |
| ssp (4.47215) | |
| isp (4.06015) | |
| ste (3.92104) | |
| ldo (2.61907) | |
| mas (2.52366) | |
| nms (2.35244) | |
| vin (1.99534) | |
| bfe (1.34872) | |
| ton (0.877501) | |
| ctl (0.612276) | |
| ese (0.379507) | |
| eye (0.170503) | |
| cki (0.165235) | |
| jca (0.11396) |