Ss1.1-rssp22_f22.5
|
CTTATCAGCCGGGCCCAGGGGACAGTGGCTCCAGGTGCGGCTTGGGACTCGCTGGCGGAG
CCATGGCCTCCCACAGACATGCAGGCCCCTCCAGCTACAAGGTAGGCACCATGGCCGAGA
AGTTTGACTGCCACTACTGCAGGGACCCGCTGCAGGGAAAGAAGTACGTGCAGAAGGACG
GCCACCACTGCTGCCTGAAGTGCTTCGACAAGTTCTGCGCCAACACCTGCGTGGAGTGCC
GCAAACCCATCGGCGCTGACTCCAAGGAGGTGCACTACAAGAACCGCTACTGGCACGACA
CCTGCTTCCGCTGCTCCAAGTGCCTTCACCCCTTGGCCAATGAGACCTTTATGGCCAAGG
ACAACAAGATCCTGTGCAACAAGTGCACCACTCGCGAGGATTCCCCCAAGTGCAAGGGGT
GCTTCAAGCCCATCGTGGCAGGCGATCAGAACGTGGAGTACAAGGGCACCGTCTGGCACA
AAGACTGCTTCACCTGCAGCAACTGCAAGCAAGTCATTGGGACAGGAAGCTTCTTCCCCA
AAGGGGAGGACTTCTACTGCGTGACTTGCCATGAGACCAAGTTTGCCAAGCACTGCGTGA
AGTGCAACAAGGCCATCACATCTGGAGGAATCACTTACCAGGATCAGCCCTGGCATGCCG
AGTGCTTTGTGTGTGTTACCTGCTCTAAGAAGCTGGCTGGGCAGCGTTTCACCGCTGTGG
AGGACCAGTATTACTGCGTGGATTGCTACAAGAACTTTGTGGCCAAGAAGTGTGCTGGAT
GCAAGAACCCCATCACTGGGTTTGGTAAAGGCTCCAGTGTGGTGGCCTATGAAGGACAAT
CCTGGCACGACTACTGCTTCCACTGCAAAAAATGCTCCGTGAATCTGGCCAACAAGCGCT
TTGTTTTCCATCAGGAGCAAGTGTATTGCCCCGACTGTGCCAAAAAGCTGTAAAGTGACA
GGGGCTCCTGTCCTGTAAAATGGAATTTGAGTCTTGTTCCTTGTGTCCTCGCCCTCTGCC
CCGTACCACCCCTGGGGCCAGAGAGGCCTTTTCACCTCTCCGAGTTGCTCCTCCTGTCCT
TCTTCCCATTTTACAGTTACGCCTCAAGTACGGGCACGCAGTGATCATGTTAGGATTTAG
CGAAAAGCAACCCTGCAGCAACGTTACTGTCCTGATAGCTGCAGTTAGCAAACGAACACG
TAGCTAGATTGACTCTTCTGCATGTTTATCCTAGAGCAGAAAAGCGCCGACCATTTAGCT
GCTTAGTGATGTAAGCAAGAAGCCTAAGAGATAAAGCCCCCACTGAGATGCCTCTCGTGG
CTCAGCTGGGACCCACCGTGTCCGTCACACGACACACGCGAGAGTTGCAGCGGCTGCTCC
AACTCGGCTGCTCACCCTGTCCTGTGAGCAGCAGGAACTTACCGAGATGCATGGTTTAAC
TTCCCCATCAACACCTTCCCTCTGTTCTTTTGTGCTTTCACACCACTAATACGGATTTCC
AGAAAACTAACATTTGAATTTAGCTGTAATTCTAACCGACCTTTCCCCTGTACTAACGTT
GGATTTGGATTTGTGGCGTGCTTTCGGAGCGTTCCTCCTGCCAAGCATGGAACACGCAAG
GCGATTGGGAGAGTGTAGGCAGGTCTGAGAAAACGAGCCTGTGTCACCAGAATGTCGTCA
CAGCGAATACTTCTGGAAGCTTAACAAAACTAACCCAGCTGTCCTTTATCTTTTTTTAAT
GAATAATGTTTTGTTTTAATGAATAGCAGCATAGTTTATGGGTTTGGAGACTTGCATGAG
AATGTTTTCGCCCCCTCAGACGTTCCTGCGGTTTTGCAATTTACCCTCCAGAAGTAACCA
TAAAACCTGAGAGGGGCAGGTGAGCAGGTGCCAGGACTGTCACTGACATGGACATGCCGT
TTCCAGACATGGCAGAGTGGGCTTCCCCCTAACCGTCGGCGGCGGCTGCTCTTGTGAGTC
TTAGGACCGTTCCTCAAGAGCTTACAGCTGGATCGCTGGGGGAGCGGGGAGGCCACGGTC
CCGGCAGGCAGAACCGGATGTCCACGTAGCGCTTACCTGAGACGCAGGAGCACCTCCTTA
CTGTATTCTAGCTACACTGTTATATTACATAGCATATCCCGAGACGACTTCAAGAGTACA
CACGTAATGACAGCGCGTATTAACATTCTCGTAGGAGTGGTTAGAGAAGCCGAAGCCTCA
TTGCTACATTTTGTCATTAGCTTTGATCATCTAACGTTTCAGTGTATCCTTACGGAAATA
AAGCAGCATATAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CTTATCAGCCGGGCCCAGGGGACAGTGGCTCCAGGTGCGGCTTGGGACTCGCTGGCGGAG
CCATGGCCTCCCACAGACATGCAGGCCCCTCCAGCTACAAGGTAGGCACCATGGCCGAGA
AGTTTGACTGCCACTACTGCAGGGACCCGCTGCAGGGAAAGAAGTACGTGCAGAAGGACG
GCCACCACTGCTGCCTGAAGTGCTTCGACAAGTTCTGCGCCAACACCTGCGTGGAGTGCC
GCAAACCCATCGGCGCTGACTCCAAGGAGGTGCACTACAAGAACCGCTACTGGCACGACA
CCTGCTTCCGCTGCTCCAAGTGCCTTCACCCCTTGGCCAATGAGACCTTTATGGCCAAGG
ACAACAAGATCCTGTGCAACAAGTGCACCACTCGCGAGGATTCCCCCAAGTGCAAGGGGT
GCTTCAAGCCCATCGTGGCAGGCGATCAGAACGTGGAGTACAAGGGCACCGTCTGGCACA
AAGACTGCTTCACCTGCAGCAACTGCAAGCAAGTCATTGGGACAGGAAGCTTCTTCCCCA
AAGGGGAGGACTTCTACTGCGTGACTTGCCATGAGACCAAGTTTGCCAAGCACTGCGTGA
AGTGCAACAAGGCCATCACATCTGGAGGAATCACTTACCAGGATCAGCCCTGGCATGCCG
AGTGCTTTGTGTGTGTTACCTGCTCTAAGAAGCTGGCTGGGCAGCGTTTCACCGCTGTGG
AGGACCAGTATTACTGCGTGGATTGCTACAAGAACTTTGTGGCCAAGAAGTGTGCTGGAT
GCAAGAACCCCATCACTGGGTTTGGTAAAGGCTCCAGTGTGGTGGCCTATGAAGGACAAT
CCTGGCACGACTACTGCTTCCACTGCAAAAAATGCTCCGTGAATCTGGCCAACAAGCGCT
TTGTTTTCCATCAGGAGCAAGTGTATTGCCCCGACTGTGCCAAAAAGCTGTAAAGTGACA
GGGGCTCCTGTCCTGTAAAATGGAATTTGAGTCTTGTTCCTTGTGTCCTCGCCCTCTGCC
CCGTACCACCCCTGGGGCCAGAGAGGCCTTTTCACCTCTCCGAGTTGCTCCTCCTGTCCT
TCTTCCCATTTTACAGTTACGCCTCAAGTACGGGCACGCAGTGATCATGTTAGGATTTAG
CGAAAAGCAACCCTGCAGCAACGTTACTGTCCTGATAGCTGCAGTTAGCAAACGAACACG
TAGCTAGATTGACTCTTCTGCATGTTTATCCTAGAGCAGAAAAGCGCCGACCATTTAGCT
GCTTAGTGATGTAAGCAAGAAGCCTAAGAGATAAAGCCCCCACTGAGATGCCTCTCGTGG
CTCAGCTGGGACCCACCGTGTCCGTCACACGACACACGCGAGAGTTGCAGCGGCTGCTCC
AACTCGGCTGCTCACCCTGTCCTGTGAGCAGCAGGAACTTACCGAGATGCATGGTTTAAC
TTCCCCATCAACACCTTCCCTCTGTTCTTTTGTGCTTTCACACCACTAATACGGATTTCC
AGAAAACTAACATTTGAATTTAGCTGTAATTCTAACCGACCTTTCCCCTGTACTAACGTT
GGATTTGGATTTGTGGCGTGCTTTCGGAGCGTTCCTCCTGCCAAGCATGGAACACGCAAG
GCGATTGGGAGAGTGTAGGCAGGTCTGAGAAAACGAGCCTGTGTCACCAGAATGTCGTCA
CAGCGAATACTTCTGGAAGCTTAACAAAACTAACCCAGCTGTCCTTTATCTTTTTTTAAT
GAATAATGTTTTGTTTTAATGAATAGCAGCATAGTTTATGGGTTTGGAGACTTGCATGAG
AATGTTTTCGCCCCCTCAGACGTTCCTGCGGTTTTGCAATTTACCCTCCAGAAGTAACCA
TAAAACCTGAGAGGGGCAGGTGAGCAGGTGCCAGGACTGTCACTGACATGGACATGCCGT
TTCCAGACATGGCAGAGTGGGCTTCCCCCTAACCGTCGGCGGCGGCTGCTCTTGTGAGTC
TTAGGACCGTTCCTCAAGAGCTTACAGCTGGATCGCTGGGGGAGCGGGGAGGCCACGGTC
CCGGCAGGCAGAACCGGATGTCCACGTAGCGCTTACCTGAGACGCAGGAGCACCTCCTTA
CTGTATTCTAGCTACACTGTTATATTACATAGCATATCCCGAGACGACTTCAAGAGTACA
CACGTAATGACAGCGCGTATTAACATTCTCGTAGGAGTGGTTAGAGAAGCCGAAGCCTCA
TTGCTACATTTTGTCATTAGCTTTGATCATCTAACGTTTCAGTGTATCCTTACGGAAATA
AAGCAGCATATAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
|
gi|47523806|ref|NP_999540.1| |
Protein identifier
|
gi|47523806|ref|NP_999540.1| |
|
610-795, gnl|bosTau2|chr11 (6817970-6817785) |
|
610-795, gnl|canFam2|chr10 (41184567-41184424) |
|
610-795, gnl|danRer3|chr22 (960290-960156) |
|
610-795, gnl|dasNov1|scaffold_1472 (131497-131354) |
|
610-795, gnl|echTel1|scaffold_177739 (8014-8157) |
|
610-795, gnl|fr1|chrUn (88913965-88913821) |
|
610-795, gnl|galGal2|chr1 (128257311-128257454) |
|
610-795, gnl|hg17|chr2 (105438250-105438393) |
|
610-795, gnl|Hg17|chr2 (105438448-105438263) |
|
610-795, gnl|loxAfr1|scaffold_4291 (49976-50119) |
|
610-795, gnl|mm7|chr1 (43368621-43368764) |
|
610-795, gnl|Mm7|chr1 (43368819-43368634) |
|
610-795, gnl|monDom2|scaffold_11 (24237029-24237169) |
|
610-795, gnl|oryCun1|scaffold_169493 (17808-17951) |
|
610-795, gnl|panTro1|chr12 (108402615-108402751) |
|
610-795, gnl|rheMac2|chr13 (105251163-105251306) |
|
610-795, gnl|rn3|chr9 (42325374-42325517) |
|
610-795, gnl|tetNig1|chr10 (8170843-8170700) |
|
610-795, gnl|xenTro1|scaffold_343 (844258-844115) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
610-795, gnl|bosTau2|chr11 (6817970-6817785) |
|
610-795, gnl|canFam2|chr10 (41184567-41184424) |
|
610-795, gnl|danRer3|chr22 (960290-960156) |
|
610-795, gnl|dasNov1|scaffold_1472 (131497-131354) |
|
610-795, gnl|echTel1|scaffold_177739 (8014-8157) |
|
610-795, gnl|fr1|chrUn (88913965-88913821) |
|
610-795, gnl|galGal2|chr1 (128257311-128257454) |
|
610-795, gnl|hg17|chr2 (105438250-105438393) |
|
610-795, gnl|Hg17|chr2 (105438448-105438263) |
|
610-795, gnl|loxAfr1|scaffold_4291 (49976-50119) |
|
610-795, gnl|mm7|chr1 (43368621-43368764) |
|
610-795, gnl|Mm7|chr1 (43368819-43368634) |
|
610-795, gnl|monDom2|scaffold_11 (24237029-24237169) |
|
610-795, gnl|oryCun1|scaffold_169493 (17808-17951) |
|
610-795, gnl|panTro1|chr12 (108402615-108402751) |
|
610-795, gnl|rheMac2|chr13 (105251163-105251306) |
|
610-795, gnl|rn3|chr9 (42325374-42325517) |
|
610-795, gnl|tetNig1|chr10 (8170843-8170700) |
|
610-795, gnl|xenTro1|scaffold_343 (844258-844115) |
|
tbr (9.55905) |
|
ssp (9.35086) |
|
nms (7.27117) |
|
ste (4.46187) |
|
ldo (3.8801) |
|
mas (3.15457) |
|
vin (2.3279) |
|
ton (1.9305) |
|
bfe (1.79829) |
|
isp (1.50376) |
|
bla (1.11912) |
|
aor (0.976372) |
|
eru (0.960384) |
|
sto (0.719295) |
|
fat (0.58971) |
|
gul (0.532765) |
|
cov (0.528611) |
|
eye (0.511509) |
|
cly (0.482567) |
|
jca (0.45584) |
|
tes (0.415628) |
|
hea (0.408998) |
|
fcc (0.39557) |
|
elu (0.385356) |
|
sug (0.381874) |
|
sme (0.305437) |
|
lin (0.291206) |
|
pla (0.267344) |
|
ese (0.253004) |
|
tra (0.246184) |
|
col (0.195008) |
|
nlu (0.191681) |
|
sin (0.174948) |
|
rec (0.17307) |
|
nje (0.16592) |
|
nco (0.161734) |
|
csp (0.161186) |
|
cag (0.151194) |
|
liv (0.146284) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
che (0.136314) |
|
ova (0.129132) |
|
eep (0.122564) |
|
pgl (0.118483) |
|
ebs (0.118301) |
|
tbr (9.55905) |
|
ssp (9.35086) |
|
nms (7.27117) |
|
ste (4.46187) |
|
ldo (3.8801) |
|
mas (3.15457) |
|
vin (2.3279) |
|
ton (1.9305) |
|
bfe (1.79829) |
|
isp (1.50376) |
|
bla (1.11912) |
|
aor (0.976372) |
|
eru (0.960384) |
|
sto (0.719295) |
|
fat (0.58971) |
|
gul (0.532765) |
|
cov (0.528611) |
|
eye (0.511509) |
|
cly (0.482567) |
|
jca (0.45584) |
|
tes (0.415628) |
|
hea (0.408998) |
|
fcc (0.39557) |
|
elu (0.385356) |
|
sug (0.381874) |
|
sme (0.305437) |
|
lin (0.291206) |
|
pla (0.267344) |
|
ese (0.253004) |
|
tra (0.246184) |
|
col (0.195008) |
|
nlu (0.191681) |
|
sin (0.174948) |
|
rec (0.17307) |
|
nje (0.16592) |
|
nco (0.161734) |
|
csp (0.161186) |
|
cag (0.151194) |
|
liv (0.146284) |
|
spl (0.143184) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
che (0.136314) |
|
ova (0.129132) |
|
eep (0.122564) |
|
pgl (0.118483) |
|
ebs (0.118301) |
