Ss1.1-rssp23_l24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGAGGGCAAAGAGGCTCCGGGTGGGTATTTTGTGACAAAGGCAAGACCCCAGGTTTGC TTAGAGCAGGTGAAGGAGGCAGCCAGGCGGGTCCCCACGTCTCCCAACAATATGGATTAT AAGTCAAGCCTGATCCAGGATGGGAACCCCATGGAGAACCTGGAGAAGCAGCTGATCTGC CCCATCTGCCTGGAGATGTTTACCAAGCCGGTGGTCATCTTGCCGTGTCAGCACAACCTC TGCCGAAAGTGTGCCAACGACATCTTCCAGGCTGCAAATCCCTACTGGACCAGCCGGAGT GGCTCGGTGTCCATGTCCGGAGGCCGTTTCCGCTGTCCCTCCTGCCGCCATGAGGTGATC ATGGACCGTCACGGAGTGTACGGCCTGCAGAGGAATCTGCTGGTGGAGAACATCATTGAC ATCTACAAGCAGGAGTGCTCCAGTCGGCCCCTGCAGAAGGGCAGCCACCCCATGTGCAAG GAGCACGAAGACGAGAAAATCAACATCTACTGCCTCACGTGCGAAGTGCCCACGTGCTCC ATGTGCAAGGTGTTTGGGGCCCACAAGGCTTGCGAGGTGGCCCCGCTGCAGAGTGTCTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGAGGGCAAAGAGGCTCCGGGTGGGTATTTTGTGACAAAGGCAAGACCCCAGGTTTGC TTAGAGCAGGTGAAGGAGGCAGCCAGGCGGGTCCCCACGTCTCCCAACAATATGGATTAT AAGTCAAGCCTGATCCAGGATGGGAACCCCATGGAGAACCTGGAGAAGCAGCTGATCTGC CCCATCTGCCTGGAGATGTTTACCAAGCCGGTGGTCATCTTGCCGTGTCAGCACAACCTC TGCCGAAAGTGTGCCAACGACATCTTCCAGGCTGCAAATCCCTACTGGACCAGCCGGAGT GGCTCGGTGTCCATGTCCGGAGGCCGTTTCCGCTGTCCCTCCTGCCGCCATGAGGTGATC ATGGACCGTCACGGAGTGTACGGCCTGCAGAGGAATCTGCTGGTGGAGAACATCATTGAC ATCTACAAGCAGGAGTGCTCCAGTCGGCCCCTGCAGAAGGGCAGCCACCCCATGTGCAAG GAGCACGAAGACGAGAAAATCAACATCTACTGCCTCACGTGCGAAGTGCCCACGTGCTCC ATGTGCAAGGTGTTTGGGGCCCACAAGGCTTGCGAGGTGGCCCCGCTGCAGAGTGTCTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 124-271, - strand, RNAz p=0.775447 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 124-271, - strand, RNAz p=0.775447 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 124-271, gnl|bosTau2|chr11 (52046477-52046328) | |
| 124-271, gnl|canFam2|chr17 (24238365-24238540) | |
| 124-271, gnl|danRer3|chr20 (45726386-45726217) | |
| 124-271, gnl|dasNov1|scaffold_54862 (4101-4278) | |
| 124-271, gnl|echTel1|scaffold_294543 (2894-3071) | |
| 124-271, gnl|fr1|chrUn (205541457-205541257) | |
| 124-271, gnl|galGal2|chrUn (103507-103692) | |
| 124-271, gnl|hg17|chr2 (27417251-27417428) | |
| 124-271, gnl|Hg17|chr2 (27417270-27417419) | |
| 124-271, gnl|loxAfr1|scaffold_3331 (78150-77973) | |
| 124-271, gnl|mm7|chr5 (30149426-30149601) | |
| 124-271, gnl|Mm7|chr5 (30149445-30149594) | |
| 124-271, gnl|monDom2|scaffold_1 (148994232-148994055) | |
| 124-271, gnl|oryCun1|scaffold_203841 (73563-73388) | |
| 124-271, gnl|panTro1|chr12 (28356935-28357112) | |
| 124-271, gnl|rheMac2|chr13 (27252274-27252451) | |
| 124-271, gnl|rn3|chr6 (25240346-25240171) | |
| 124-271, gnl|tetNig1|chr14 (9255814-9255614) | |
| 124-271, gnl|xenTro1|scaffold_777 (493861-494034) | |
| 316-441, gnl|bosTau2|chr11 (52030639-52030514) | |
| 316-441, gnl|canFam2|chr17 (24254217-24254351) | |
| 316-441, gnl|danRer3|chr20 (45721958-45721824) | |
| 316-441, gnl|dasNov1|scaffold_56512 (1127-1260) | |
| 316-441, gnl|echTel1|scaffold_310269 (30251-30385) | |
| 316-441, gnl|fr1|chrUn (205540737-205540602) | |
| 316-441, gnl|galGal2|chrUn (103821-103955) | |
| 316-441, gnl|hg17|chr2 (27433132-27433266) | |
| 316-441, gnl|Hg17|chr2 (27433131-27433256) | |
| 316-441, gnl|loxAfr1|scaffold_3331 (61816-61682) | |
| 316-441, gnl|mm7|chr5 (30163604-30163742) | |
| 316-441, gnl|Mm7|chr5 (30163603-30163728) | |
| 316-441, gnl|monDom2|scaffold_1 (148963932-148963799) | |
| 316-441, gnl|oryCun1|scaffold_203841 (55646-55512) | |
| 316-441, gnl|panTro1|chr12 (28372869-28373003) | |
| 316-441, gnl|rheMac2|chr13 (27267640-27267774) | |
| 316-441, gnl|rn3|chr6 (25227821-25227687) | |
| 316-441, gnl|tetNig1|chr14 (9254716-9254581) | |
| 316-441, gnl|xenTro1|scaffold_777 (495699-495831) | |
| 461-589, gnl|bosTau2|chr11 (52029982-52029855) | |
| 461-589, gnl|Hg17|chr2 (27433785-27433912) | |
| 461-589, gnl|Mm7|chr5 (30164525-30164652) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 124-271, gnl|bosTau2|chr11 (52046477-52046328) | |
| 124-271, gnl|canFam2|chr17 (24238365-24238540) | |
| 124-271, gnl|danRer3|chr20 (45726386-45726217) | |
| 124-271, gnl|dasNov1|scaffold_54862 (4101-4278) | |
| 124-271, gnl|echTel1|scaffold_294543 (2894-3071) | |
| 124-271, gnl|fr1|chrUn (205541457-205541257) | |
| 124-271, gnl|galGal2|chrUn (103507-103692) | |
| 124-271, gnl|hg17|chr2 (27417251-27417428) | |
| 124-271, gnl|Hg17|chr2 (27417270-27417419) | |
| 124-271, gnl|loxAfr1|scaffold_3331 (78150-77973) | |
| 124-271, gnl|mm7|chr5 (30149426-30149601) | |
| 124-271, gnl|Mm7|chr5 (30149445-30149594) | |
| 124-271, gnl|monDom2|scaffold_1 (148994232-148994055) | |
| 124-271, gnl|oryCun1|scaffold_203841 (73563-73388) | |
| 124-271, gnl|panTro1|chr12 (28356935-28357112) | |
| 124-271, gnl|rheMac2|chr13 (27252274-27252451) | |
| 124-271, gnl|rn3|chr6 (25240346-25240171) | |
| 124-271, gnl|tetNig1|chr14 (9255814-9255614) | |
| 124-271, gnl|xenTro1|scaffold_777 (493861-494034) | |
| 316-441, gnl|bosTau2|chr11 (52030639-52030514) | |
| 316-441, gnl|canFam2|chr17 (24254217-24254351) | |
| 316-441, gnl|danRer3|chr20 (45721958-45721824) | |
| 316-441, gnl|dasNov1|scaffold_56512 (1127-1260) | |
| 316-441, gnl|echTel1|scaffold_310269 (30251-30385) | |
| 316-441, gnl|fr1|chrUn (205540737-205540602) | |
| 316-441, gnl|galGal2|chrUn (103821-103955) | |
| 316-441, gnl|hg17|chr2 (27433132-27433266) | |
| 316-441, gnl|Hg17|chr2 (27433131-27433256) | |
| 316-441, gnl|loxAfr1|scaffold_3331 (61816-61682) | |
| 316-441, gnl|mm7|chr5 (30163604-30163742) | |
| 316-441, gnl|Mm7|chr5 (30163603-30163728) | |
| 316-441, gnl|monDom2|scaffold_1 (148963932-148963799) | |
| 316-441, gnl|oryCun1|scaffold_203841 (55646-55512) | |
| 316-441, gnl|panTro1|chr12 (28372869-28373003) | |
| 316-441, gnl|rheMac2|chr13 (27267640-27267774) | |
| 316-441, gnl|rn3|chr6 (25227821-25227687) | |
| 316-441, gnl|tetNig1|chr14 (9254716-9254581) | |
| 316-441, gnl|xenTro1|scaffold_777 (495699-495831) | |
| 461-589, gnl|bosTau2|chr11 (52029982-52029855) | |
| 461-589, gnl|Hg17|chr2 (27433785-27433912) | |
| 461-589, gnl|Mm7|chr5 (30164525-30164652) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mas (0.210305) | |
| ssp (0.13552) | |
| ldo (0.0970026) |