Ss1.1-rssp24_h24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGGATGTGACACTTCAGGAGGGTACATCTGCAGAAAACACAGTACAGAACCATATAGAT ATAGCACAATCAGATAAACTTACTTCTGAGACATTGGGTTCTAGCTCAGAAGAAAGGAAT GACTTCAATCTTGATGGCCCTTGTGGGGTTCCAGAAGAATCCACTTTGTCTGAACAAGAC AAGGAACCAGGAACTTCAGATCAAACTAGCACCGAAAGTGCTACCAGCCATCCTGAACCT CAGGCACAAACCGAAGCCGTTGGACCTTCAGCTCAGGAGGAAACATTGGCCAGAGACTCT GCTCTCCAGGACACAGATGACAGTGACGATGACCCAGTCCTGATCCCAGGGGCAAGGTAT CGAGCAGCACCTGGTGATAGACGCTCTGCTGTGGCCCGCATTCAGGAGTTCTTCAGGCGG AGAAAAGAAAGGAAAGAAATGGAAGAACTGGATACTCTGAACATTAGAAGGCCACTAGTA AAGATGGTTTATAAGGGCCATCGCAACTCCAGGACAATGATAAAAGAAGCCAACTTCTGG GGTGCTAACTTTGTAATGAGTGGTTCTGACTGTGGCCATATCTTCATCTGGGATCGTCAC ACTGCTGAGCATTTAATGCTTCTGGAAGCTGATAATCACGTGGTAAACTGCCTGCAGCCA CATCCGTTTGACCCAATTCTAGCCTCATCTGGAATAGATTATGACATAAAGATCTGGTCA CCACTAGAAGAGTCCAGGATTTTTAACCGAAAACTTGCTGATGAAGTTATAACTCGAAAT GAACTCATGCTGGAAGAGACAAGAAATACCATTACAGTTCCAGCCTCTTTCATGTTGAGG ATGTTGGCTTCACTGAATCATATCCGAGCTGACCGACTGGAGGGTGACAGATCGGAAGGC TCTGGTCAGGAGAATGAAAATGAGGATGAGGAATAATCAACTCTTATTGGCAAGCACTTA GATGTTCTGAAATTTGTATAAGACATTTATTATATTTTTTCCTTTACAGAGCTTTAGTGC AATTTTAAAGGTTATGGGTTTTTTTGGAGTTTTTCCCTTTTGGGGGGATAACCTAACATT GATTTGAAATGATTGTGTGCATGAATTTGGGAGCGTGTGTAATACAAAACTAGCAAAATG TTTTAAAAACTTTTTGCCGTGTATGAGGAGTGCTAGAAAATGCAAAGTGCAATATTTTCC CTAACCTTCAGATGTGGGAGCTTGGATCAATGTTGAAGAGTAATTTTCATTATAGTGAAA ATGTTGGTTCAAATAAATTTCTACACTTGCCATTTGCATGTTTGTTGCTTTCTAATTAAA GAATTTGGTTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGGATGTGACACTTCAGGAGGGTACATCTGCAGAAAACACAGTACAGAACCATATAGAT ATAGCACAATCAGATAAACTTACTTCTGAGACATTGGGTTCTAGCTCAGAAGAAAGGAAT GACTTCAATCTTGATGGCCCTTGTGGGGTTCCAGAAGAATCCACTTTGTCTGAACAAGAC AAGGAACCAGGAACTTCAGATCAAACTAGCACCGAAAGTGCTACCAGCCATCCTGAACCT CAGGCACAAACCGAAGCCGTTGGACCTTCAGCTCAGGAGGAAACATTGGCCAGAGACTCT GCTCTCCAGGACACAGATGACAGTGACGATGACCCAGTCCTGATCCCAGGGGCAAGGTAT CGAGCAGCACCTGGTGATAGACGCTCTGCTGTGGCCCGCATTCAGGAGTTCTTCAGGCGG AGAAAAGAAAGGAAAGAAATGGAAGAACTGGATACTCTGAACATTAGAAGGCCACTAGTA AAGATGGTTTATAAGGGCCATCGCAACTCCAGGACAATGATAAAAGAAGCCAACTTCTGG GGTGCTAACTTTGTAATGAGTGGTTCTGACTGTGGCCATATCTTCATCTGGGATCGTCAC ACTGCTGAGCATTTAATGCTTCTGGAAGCTGATAATCACGTGGTAAACTGCCTGCAGCCA CATCCGTTTGACCCAATTCTAGCCTCATCTGGAATAGATTATGACATAAAGATCTGGTCA CCACTAGAAGAGTCCAGGATTTTTAACCGAAAACTTGCTGATGAAGTTATAACTCGAAAT GAACTCATGCTGGAAGAGACAAGAAATACCATTACAGTTCCAGCCTCTTTCATGTTGAGG ATGTTGGCTTCACTGAATCATATCCGAGCTGACCGACTGGAGGGTGACAGATCGGAAGGC TCTGGTCAGGAGAATGAAAATGAGGATGAGGAATAATCAACTCTTATTGGCAAGCACTTA GATGTTCTGAAATTTGTATAAGACATTTATTATATTTTTTCCTTTACAGAGCTTTAGTGC AATTTTAAAGGTTATGGGTTTTTTTGGAGTTTTTCCCTTTTGGGGGGATAACCTAACATT GATTTGAAATGATTGTGTGCATGAATTTGGGAGCGTGTGTAATACAAAACTAGCAAAATG TTTTAAAAACTTTTTGCCGTGTATGAGGAGTGCTAGAAAATGCAAAGTGCAATATTTTCC CTAACCTTCAGATGTGGGAGCTTGGATCAATGTTGAAGAGTAATTTTCATTATAGTGAAA ATGTTGGTTCAAATAAATTTCTACACTTGCCATTTGCATGTTTGTTGCTTTCTAATTAAA GAATTTGGTTGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 133-246, + strand, RNAz p=0.999111 | |
| 990-1191, + strand, RNAz p=0.811025 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 133-246, + strand, RNAz p=0.999111 | |
| 990-1191, + strand, RNAz p=0.811025 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC025262, + |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 63-380, gnl|bosTau2|chr3 (807322-807645) | |
| 63-380, gnl|canFam2|chr7 (33412902-33412630) | |
| 63-380, gnl|echTel1|scaffold_293827 (4323-4599) | |
| 63-380, gnl|galGal2|chr1 (85332962-85332701) | |
| 63-380, gnl|hg17|chr1 (164745730-164746010) | |
| 63-380, gnl|Hg17|chr1 (164745794-164746123) | |
| 63-380, gnl|loxAfr1|scaffold_34950 (10325-10049) | |
| 63-380, gnl|mm7|chr1 (165322234-165321899) | |
| 63-380, gnl|Mm7|chr1 (165322182-165321784) | |
| 63-380, gnl|monDom2|scaffold_16 (18904403-18904677) | |
| 63-380, gnl|oryCun1|scaffold_199963 (59891-59615) | |
| 63-380, gnl|panTro1|chr1 (147002061-147002341) | |
| 63-380, gnl|rheMac2|chr1 (197775775-197776055) | |
| 63-380, gnl|rn3|chr13 (81119014-81118754) | |
| 519-676, gnl|bosTau2|chr3 (832377-832534) | |
| 519-676, gnl|canFam2|chr7 (33388072-33387904) | |
| 519-676, gnl|danRer3|chr9 (30998794-30998626) | |
| 519-676, gnl|echTel1|scaffold_293827 (20595-20763) | |
| 519-676, gnl|fr1|chrUn (203878062-203877898) | |
| 519-676, gnl|galGal2|chr1 (85312361-85312207) | |
| 519-676, gnl|hg17|chr1 (164766480-164766648) | |
| 519-676, gnl|Hg17|chr1 (164766485-164766642) | |
| 519-676, gnl|loxAfr1|scaffold_61820 (4359-4513) | |
| 519-676, gnl|mm7|chr1 (165309252-165309084) | |
| 519-676, gnl|Mm7|chr1 (165309245-165309088) | |
| 519-676, gnl|monDom2|scaffold_16 (18925705-18925873) | |
| 519-676, gnl|oryCun1|scaffold_199963 (41221-41053) | |
| 519-676, gnl|panTro1|chr1 (147021934-147022102) | |
| 519-676, gnl|rheMac2|chr1 (197795561-197795729) | |
| 519-676, gnl|rn3|chr13 (81106287-81106119) | |
| 519-676, gnl|tetNig1|chr2 (9284448-9284614) | |
| 519-676, gnl|xenTro1|scaffold_19 (3232814-3232652) | |
| 871-1332, gnl|bosTau2|chr3 (850780-851243) | |
| 871-1332, gnl|Hg17|chr1 (164776266-164776723) | |
| 871-1332, gnl|Mm7|chr1 (165300904-165300416) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 63-380, gnl|bosTau2|chr3 (807322-807645) | |
| 63-380, gnl|canFam2|chr7 (33412902-33412630) | |
| 63-380, gnl|echTel1|scaffold_293827 (4323-4599) | |
| 63-380, gnl|galGal2|chr1 (85332962-85332701) | |
| 63-380, gnl|hg17|chr1 (164745730-164746010) | |
| 63-380, gnl|Hg17|chr1 (164745794-164746123) | |
| 63-380, gnl|loxAfr1|scaffold_34950 (10325-10049) | |
| 63-380, gnl|mm7|chr1 (165322234-165321899) | |
| 63-380, gnl|Mm7|chr1 (165322182-165321784) | |
| 63-380, gnl|monDom2|scaffold_16 (18904403-18904677) | |
| 63-380, gnl|oryCun1|scaffold_199963 (59891-59615) | |
| 63-380, gnl|panTro1|chr1 (147002061-147002341) | |
| 63-380, gnl|rheMac2|chr1 (197775775-197776055) | |
| 63-380, gnl|rn3|chr13 (81119014-81118754) | |
| 519-676, gnl|bosTau2|chr3 (832377-832534) | |
| 519-676, gnl|canFam2|chr7 (33388072-33387904) | |
| 519-676, gnl|danRer3|chr9 (30998794-30998626) | |
| 519-676, gnl|echTel1|scaffold_293827 (20595-20763) | |
| 519-676, gnl|fr1|chrUn (203878062-203877898) | |
| 519-676, gnl|galGal2|chr1 (85312361-85312207) | |
| 519-676, gnl|hg17|chr1 (164766480-164766648) | |
| 519-676, gnl|Hg17|chr1 (164766485-164766642) | |
| 519-676, gnl|loxAfr1|scaffold_61820 (4359-4513) | |
| 519-676, gnl|mm7|chr1 (165309252-165309084) | |
| 519-676, gnl|Mm7|chr1 (165309245-165309088) | |
| 519-676, gnl|monDom2|scaffold_16 (18925705-18925873) | |
| 519-676, gnl|oryCun1|scaffold_199963 (41221-41053) | |
| 519-676, gnl|panTro1|chr1 (147021934-147022102) | |
| 519-676, gnl|rheMac2|chr1 (197795561-197795729) | |
| 519-676, gnl|rn3|chr13 (81106287-81106119) | |
| 519-676, gnl|tetNig1|chr2 (9284448-9284614) | |
| 519-676, gnl|xenTro1|scaffold_19 (3232814-3232652) | |
| 871-1332, gnl|bosTau2|chr3 (850780-851243) | |
| 871-1332, gnl|Hg17|chr1 (164776266-164776723) | |
| 871-1332, gnl|Mm7|chr1 (165300904-165300416) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| tbr (1.23343) | |
| sme (0.91631) | |
| ldo (0.679018) | |
| vin (0.665115) | |
| hea (0.613497) | |
| ste (0.540833) | |
| bfe (0.449573) | |
| ssp (0.406559) | |
| isp (0.300752) | |
| cte (0.29274) | |
| pla (0.267344) | |
| tes (0.207814) | |
| gul (0.177588) | |
| sin (0.174948) | |
| eye (0.170503) | |
| cki (0.165235) | |
| ski (0.146735) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| eje (0.0988338) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (1.23343) | |
| sme (0.91631) | |
| ldo (0.679018) | |
| vin (0.665115) | |
| hea (0.613497) | |
| ste (0.540833) | |
| bfe (0.449573) | |
| ssp (0.406559) | |
| isp (0.300752) | |
| cte (0.29274) | |
| pla (0.267344) | |
| tes (0.207814) | |
| gul (0.177588) | |
| sin (0.174948) | |
| eye (0.170503) | |
| cki (0.165235) | |
| ski (0.146735) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| eje (0.0988338) |