Non-Coding RNA Search

Ss1.1-rssp24_j21.5

Sequence:


               
               ACAACCTTAGTGCTTGTTCTGTAGTCGCACTGTCAGTGGGCTGCCTCTAGCAGTTAGAGG
GTTTTGTTGATGTCCCTCTCCAGGCGTGTCTGTAGGCAAGGAGCATCATTTGCAGGCTGG
TCATGACTGGTACAGCGCCAACGGATGGATGAGAACTTCCGGGAATATTGCCTGCTGTTT
GTCTGTCTGAAGTCAGTGTCAAAACTGCATCCCAAGTTCATGAAGTTGTCACTCAGTTTG
GGTTAAGAAAGCCAGTAGTGTTTTCTCTGCTAACGTGGATAGCTCTTCCCCTGTAACGTG
ACTTGGCCAAAATCGAACTTGAACTTCCACACTTTGAAAGAAAGCACAGTATGAACCTTA
ACATAAGCATCTACATTGACCACGAAAAGTCTACATCCTGGGCAGAAAAAGGCACAAACT
TGGTCCAAGGTAGGATTCTTCAAAAGCATCTAACTAAACTTGCGTGTTATGCCACTGGAT
GTGACTTTTGAAGACGTTATGAATTGTTCAATGCCTCCTTCTGTGTTAATTTGCTGTTGC
TGTTTTGTGATACAAAATAAACTTATCTGGGATTGTTAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAACCTTAGTGCTTGTTCTGTAGTCGCACTGTCAGTGGGCTGCCTCTAGCAGTTAGAGG
GTTTTGTTGATGTCCCTCTCCAGGCGTGTCTGTAGGCAAGGAGCATCATTTGCAGGCTGG
TCATGACTGGTACAGCGCCAACGGATGGATGAGAACTTCCGGGAATATTGCCTGCTGTTT
GTCTGTCTGAAGTCAGTGTCAAAACTGCATCCCAAGTTCATGAAGTTGTCACTCAGTTTG
GGTTAAGAAAGCCAGTAGTGTTTTCTCTGCTAACGTGGATAGCTCTTCCCCTGTAACGTG
ACTTGGCCAAAATCGAACTTGAACTTCCACACTTTGAAAGAAAGCACAGTATGAACCTTA
ACATAAGCATCTACATTGACCACGAAAAGTCTACATCCTGGGCAGAAAAAGGCACAAACT
TGGTCCAAGGTAGGATTCTTCAAAAGCATCTAACTAAACTTGCGTGTTATGCCACTGGAT
GTGACTTTTGAAGACGTTATGAATTGTTCAATGCCTCCTTCTGTGTTAATTTGCTGTTGC
TGTTTTGTGATACAAAATAAACTTATCTGGGATTGTTAAAAAAAAAAA

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               4-577, gnl|bosTau2|chr20 (37157616-37157045)
               

               
               4-577, gnl|canFam2|chr34 (9048293-9047889)
               

               
               4-577, gnl|dasNov1|scaffold_65117 (6615-7005)
               

               
               4-577, gnl|hg17|chr5 (7989714-7990083)
               

               
               4-577, gnl|Hg17|chr5 (9089665-9089088)
               

               
               4-577, gnl|mm7|chr15 (32807121-32807492)
               

               
               4-577, gnl|Mm7|chr15 (32807026-32807541)
               

               
               4-577, gnl|oryCun1|scaffold_145423 (10116-9729)
               

               
               4-577, gnl|panTro1|chr4 (8180374-8180743)
               

               
               4-577, gnl|rheMac2|chr6 (7794449-7794819)
               

               
               4-577, gnl|rn3|chr2 (85102256-85102621)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-577, gnl|bosTau2|chr20 (37157616-37157045)
               

               
               4-577, gnl|canFam2|chr34 (9048293-9047889)
               

               
               4-577, gnl|dasNov1|scaffold_65117 (6615-7005)
               

               
               4-577, gnl|hg17|chr5 (7989714-7990083)
               

               
               4-577, gnl|Hg17|chr5 (9089665-9089088)
               

               
               4-577, gnl|mm7|chr15 (32807121-32807492)
               

               
               4-577, gnl|Mm7|chr15 (32807026-32807541)
               

               
               4-577, gnl|oryCun1|scaffold_145423 (10116-9729)
               

               
               4-577, gnl|panTro1|chr4 (8180374-8180743)
               

               
               4-577, gnl|rheMac2|chr6 (7794449-7794819)
               

               
               4-577, gnl|rn3|chr2 (85102256-85102621)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               ski (0.146735)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               spc (0.113366)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               ski (0.146735)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               spc (0.113366)

	4-577, gnl\|bosTau2\|chr20 (37157616-37157045)
	4-577, gnl\|canFam2\|chr34 (9048293-9047889)
	4-577, gnl\|dasNov1\|scaffold_65117 (6615-7005)
	4-577, gnl\|hg17\|chr5 (7989714-7990083)
	4-577, gnl\|Hg17\|chr5 (9089665-9089088)
	4-577, gnl\|mm7\|chr15 (32807121-32807492)
	4-577, gnl\|Mm7\|chr15 (32807026-32807541)
	4-577, gnl\|oryCun1\|scaffold_145423 (10116-9729)
	4-577, gnl\|panTro1\|chr4 (8180374-8180743)
	4-577, gnl\|rheMac2\|chr6 (7794449-7794819)
	4-577, gnl\|rn3\|chr2 (85102256-85102621)

	gul (0.177588)
	fbs (0.175346)
	rec (0.17307)
	ski (0.146735)
	hlv (0.139256)
	ssp (0.13552)
	spc (0.113366)