Non-Coding RNA Search

Ss1.1-rssp24_l5.5

Sequence:


               
               AAGGAATCCTGGAGCTATTGAGGAGGAAAGCTCTCTGGGACACTGTTGCGTGGTCCGGGC
ACTGGCGAGAGGCACCGGGGCCAGGAACTCGGGTCCACCCCACAGTTCTGACCACTGCGA
TCCAGAAGAGGGCACGCCACATGGGGAGTGCTGGTTCCAGAGCATGCAGCCTGGAGGGGA
AGGGAAACAGAAGGAGTATGGAGAGGGAAGAGTTTTATAATCCCGACAGATGACACCAAG
AGCAGAGGTGACAAATGGAGGCCTGGCCTTCCGCGTGCCAGATCCACACGCCTGACTTGT
CCGGCCTGCACCCCCTCTGCCCCCTGCCCCCGTGGCAGGAGGAATCCTGTCACGTTCCAG
GGGAATTGCGGATGGGCCTTCTGCATCCTTCCCCTGCCCTTAGATCTCCATTTTTATCAA
ATAGTTCATTGCATTTTGAAGTCTGGGGTTTTTTTCCCTTTGTCCTTCCCTTCCCTTCAG
ATCCTTAATGATAAGCAAACAAGTGAAGTTTGGTGCAAGCTCAACTTTTTAAGTGGTGTG
GAAATGCAAGTAATACCAAGTAAAATAATACAGATATTATTAAGATTTTTGGTTTTGAGG
TGTTGTAGATAAATGTATTTATGTGCCTAGTGGGGAATCCAGTATTATGAATATTAAAAA
AAGGGGGCAATAAAAAGGGTATGTAAAATATGTATGAAGAAAAGGTGTATAAAGATTTGC
CCTTATGCACGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGAATCCTGGAGCTATTGAGGAGGAAAGCTCTCTGGGACACTGTTGCGTGGTCCGGGC
ACTGGCGAGAGGCACCGGGGCCAGGAACTCGGGTCCACCCCACAGTTCTGACCACTGCGA
TCCAGAAGAGGGCACGCCACATGGGGAGTGCTGGTTCCAGAGCATGCAGCCTGGAGGGGA
AGGGAAACAGAAGGAGTATGGAGAGGGAAGAGTTTTATAATCCCGACAGATGACACCAAG
AGCAGAGGTGACAAATGGAGGCCTGGCCTTCCGCGTGCCAGATCCACACGCCTGACTTGT
CCGGCCTGCACCCCCTCTGCCCCCTGCCCCCGTGGCAGGAGGAATCCTGTCACGTTCCAG
GGGAATTGCGGATGGGCCTTCTGCATCCTTCCCCTGCCCTTAGATCTCCATTTTTATCAA
ATAGTTCATTGCATTTTGAAGTCTGGGGTTTTTTTCCCTTTGTCCTTCCCTTCCCTTCAG
ATCCTTAATGATAAGCAAACAAGTGAAGTTTGGTGCAAGCTCAACTTTTTAAGTGGTGTG
GAAATGCAAGTAATACCAAGTAAAATAATACAGATATTATTAAGATTTTTGGTTTTGAGG
TGTTGTAGATAAATGTATTTATGTGCCTAGTGGGGAATCCAGTATTATGAATATTAAAAA
AAGGGGGCAATAAAAAGGGTATGTAAAATATGTATGAAGAAAAGGTGTATAAAGATTTGC
CCTTATGCACGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               238-357, - strand, RNAz p=0.855058
               

               
               614-732, + strand, RNAz p=0.986586

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               238-357, - strand, RNAz p=0.855058
               

               
               614-732, + strand, RNAz p=0.986586

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK127536, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK127536, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-732, gnl|bosTau2|chr3 (20766888-20767624)
               

               
               1-732, gnl|Hg17|chr1 (119138484-119137769)
               

               
               1-732, gnl|Mm7|chr3 (99148938-99149639)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-732, gnl|bosTau2|chr3 (20766888-20767624)
               

               
               1-732, gnl|Hg17|chr1 (119138484-119137769)
               

               
               1-732, gnl|Mm7|chr3 (99148938-99149639)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ldo (0.485013)
               

               
               mas (0.42061)
               

               
               sme (0.305437)
               

               
               col (0.195008)
               

               
               bfe (0.149858)
               

               
               ssp (0.13552)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ldo (0.485013)
               

               
               mas (0.42061)
               

               
               sme (0.305437)
               

               
               col (0.195008)
               

               
               bfe (0.149858)
               

               
               ssp (0.13552)
               

               
               eep (0.122564)
               

               
               jca (0.11396)

	238-357, - strand, RNAz p=0.855058
	614-732, + strand, RNAz p=0.986586

	1-732, gnl\|bosTau2\|chr3 (20766888-20767624)
	1-732, gnl\|Hg17\|chr1 (119138484-119137769)
	1-732, gnl\|Mm7\|chr3 (99148938-99149639)

	ldo (0.485013)
	mas (0.42061)
	sme (0.305437)
	col (0.195008)
	bfe (0.149858)
	ssp (0.13552)
	eep (0.122564)
	jca (0.11396)