Ss1.1-rssp24_n11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGACGGTACCGAGCGGCTCCAGGCGCGAGGTGAAAGCTCCCGGCCGACTCCTGCTCTCT AGCTATGGCACCTCCATCAGTCTTTGCCGAGGTTCCTCAGGCTCAGCCGGTCCTTGTCTT TAAGCTCATTGCTGACTTCCGGGAGGATCCGGACCCCCGCAAGGTCAACCTAGGAGTGGG AGCTTATCGCACCGATGATTGCCAGCCCTGGGTTTTGCCAGTCGTGAGGAAGGTGGAGCA GAGGATTGCTAATGACAGCAGCCTAAACCACGAGTACCTGCCCATCCTGGGCCTGGCAGA GTTCCGGACCTGTGCTTCCCGCCTTGCCCTTGGAGATGACAGCCCAGCTCTTCAGGAGAA GCGGGTGGGAGGGGTGCAGTCTTTGGGGGGAACGGGTGCACTTCGAATTGGAGCTGAGTT CTTAGCACGATGGTACAATGGAACAAACAACAAAGACACGCCTGTCTACGTATCCTCACC AACCTGGGAAAATCACAATGGAGTCTTCACTACTGCTGGATTCAAAGACATTCGGTCCTA TCGCTATTGGGATACCGAGAAGAGAGGACTTGATCTCCAGGGTTTCCTGAGTGATCTGGA GAACGCTCCTGAGTTCTCCATCTTTGTCCTCCACGCCTGTGCCCACAACCCGACAGGGAC CGACCCAACTCCGGAGCAGTGGAAGCAGATCGCCTCTGTCATGAAGCGCCGGTTTCTGTT CCCCTTCTTTGACTCAGCCTATCAGGGCTTCGCATCTGGCAACCTAGAAAAAGACGCCTG GGCCATTCGCTATTTTGTGTCTGAAGGGTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAA GAACTTCGGGCTCTACAATGAGCGCGTGGGGAACCTGACCGTGGTTGCAAAAGAACCCGA TAGCATCCTGCGAGTCCTTTCCCAGATGGAGAAGATCGTGCGAGTGACGTGGTCCAATCC CCCTGCTCAGGGAGCGAGAATCGTGGCCCGTACGCTCTCTGACCCTGAGCTCTTTCATGA ATGGACAGGTAACGTGAAGACAATGGCTGACCGCATTCTGAGCATGAGATCTGAGCTTAG GGCACGATTAGAAGCCCTCAAGACCCCTGGAACCTGGAACCACATCACGGACCAGATTGG AATGTTCAGCTTCACTGGGTTGAACCCCAAGCAGGTTGAATATCTGATCAACGAAAAGCA CATCTATCTGCTACCAAGTGGTCGGATCAACATGTGTGGCTTAACCACCAAAAATCTAGA TTATGTGGCCACCTCCATCCATGAAGCTGTCACCAAAATCCAGTGAAGCAACACCACCCA AGCCAGCGCCACCCAAGCGGTCCTCTGTCTCGTGTGTTCCCTGCCTGCACAAACCTGGTT CTATACATCACAACTGTATTAGAGGCTACCGAGGGACAGAAAAGGCTGCTCTGGTGAGGT AGCTGCTATTTAAATTGGCCCCATGGGAAGAGAACATCTCTTGAAAAGAAATGGGGGCCA GGGAATAGAGCCCTTTTGGAGGCCAGAGCAAATTCAGGCTTTTATTTGAAAAGAATAAAA AGGTCCTTTGATCATGAGATGTAGATGTCTTGCCCCCTCACTAGAAGCAGGAGTATTGCC TGTGTCACTCACGTGCTCCTGTGTGTTTTACTCTGTACAAAGTCTAGTCCCAAAGATCAA GTTGTCTGAAGAGCAAAGTGTGATTGTGGGTATTGGCTGTGTCATTAACAGTTGTCCTCT GGACCCAGAGTGTCTGTCTCCCTGCTCTTTCTGCATGGCTCTGTCCCTAGCCCTAAGCTT GAGTTCTTTAGGGTGGTCAAGGTAGGAAATATATTTATATTTTACCCACACGTTAACTGA AATAAAAGTTTCACAGAGTCAAATTTACCCTTACTATGTGGAGTACATTCTGGTATTTTC TATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTGTTGTTTCACTAAA GAAATAAAAGTGCTGATTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGACGGTACCGAGCGGCTCCAGGCGCGAGGTGAAAGCTCCCGGCCGACTCCTGCTCTCT AGCTATGGCACCTCCATCAGTCTTTGCCGAGGTTCCTCAGGCTCAGCCGGTCCTTGTCTT TAAGCTCATTGCTGACTTCCGGGAGGATCCGGACCCCCGCAAGGTCAACCTAGGAGTGGG AGCTTATCGCACCGATGATTGCCAGCCCTGGGTTTTGCCAGTCGTGAGGAAGGTGGAGCA GAGGATTGCTAATGACAGCAGCCTAAACCACGAGTACCTGCCCATCCTGGGCCTGGCAGA GTTCCGGACCTGTGCTTCCCGCCTTGCCCTTGGAGATGACAGCCCAGCTCTTCAGGAGAA GCGGGTGGGAGGGGTGCAGTCTTTGGGGGGAACGGGTGCACTTCGAATTGGAGCTGAGTT CTTAGCACGATGGTACAATGGAACAAACAACAAAGACACGCCTGTCTACGTATCCTCACC AACCTGGGAAAATCACAATGGAGTCTTCACTACTGCTGGATTCAAAGACATTCGGTCCTA TCGCTATTGGGATACCGAGAAGAGAGGACTTGATCTCCAGGGTTTCCTGAGTGATCTGGA GAACGCTCCTGAGTTCTCCATCTTTGTCCTCCACGCCTGTGCCCACAACCCGACAGGGAC CGACCCAACTCCGGAGCAGTGGAAGCAGATCGCCTCTGTCATGAAGCGCCGGTTTCTGTT CCCCTTCTTTGACTCAGCCTATCAGGGCTTCGCATCTGGCAACCTAGAAAAAGACGCCTG GGCCATTCGCTATTTTGTGTCTGAAGGGTTCGAGCTCTTCTGTGCCCAGTCCTTCTCCAA GAACTTCGGGCTCTACAATGAGCGCGTGGGGAACCTGACCGTGGTTGCAAAAGAACCCGA TAGCATCCTGCGAGTCCTTTCCCAGATGGAGAAGATCGTGCGAGTGACGTGGTCCAATCC CCCTGCTCAGGGAGCGAGAATCGTGGCCCGTACGCTCTCTGACCCTGAGCTCTTTCATGA ATGGACAGGTAACGTGAAGACAATGGCTGACCGCATTCTGAGCATGAGATCTGAGCTTAG GGCACGATTAGAAGCCCTCAAGACCCCTGGAACCTGGAACCACATCACGGACCAGATTGG AATGTTCAGCTTCACTGGGTTGAACCCCAAGCAGGTTGAATATCTGATCAACGAAAAGCA CATCTATCTGCTACCAAGTGGTCGGATCAACATGTGTGGCTTAACCACCAAAAATCTAGA TTATGTGGCCACCTCCATCCATGAAGCTGTCACCAAAATCCAGTGAAGCAACACCACCCA AGCCAGCGCCACCCAAGCGGTCCTCTGTCTCGTGTGTTCCCTGCCTGCACAAACCTGGTT CTATACATCACAACTGTATTAGAGGCTACCGAGGGACAGAAAAGGCTGCTCTGGTGAGGT AGCTGCTATTTAAATTGGCCCCATGGGAAGAGAACATCTCTTGAAAAGAAATGGGGGCCA GGGAATAGAGCCCTTTTGGAGGCCAGAGCAAATTCAGGCTTTTATTTGAAAAGAATAAAA AGGTCCTTTGATCATGAGATGTAGATGTCTTGCCCCCTCACTAGAAGCAGGAGTATTGCC TGTGTCACTCACGTGCTCCTGTGTGTTTTACTCTGTACAAAGTCTAGTCCCAAAGATCAA GTTGTCTGAAGAGCAAAGTGTGATTGTGGGTATTGGCTGTGTCATTAACAGTTGTCCTCT GGACCCAGAGTGTCTGTCTCCCTGCTCTTTCTGCATGGCTCTGTCCCTAGCCCTAAGCTT GAGTTCTTTAGGGTGGTCAAGGTAGGAAATATATTTATATTTTACCCACACGTTAACTGA AATAAAAGTTTCACAGAGTCAAATTTACCCTTACTATGTGGAGTACATTCTGGTATTTTC TATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTATTCTGTTGTTTCACTAAA GAAATAAAAGTGCTGATTGAGAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 69 entry(ies) | More info |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
| 181-367, gnl|bosTau2|chr26 (11738940-11738754) | |
| 181-367, gnl|canFam2|chr28 (15364841-15365032) | |
| 181-367, gnl|danRer3|chr13 (41018868-41018680) | |
| 181-367, gnl|dasNov1|scaffold_9022 (32639-32448) | |
| 181-367, gnl|echTel1|scaffold_231811 (2275-2465) | |
| 181-367, gnl|fr1|chrUn (156937553-156937742) | |
| 181-367, gnl|galGal2|chr6 (21306442-21306251) | |
| 181-367, gnl|hg17|chr10 (101170368-101170559) | |
| 181-367, gnl|Hg17|chr10 (101170554-101170368) | |
| 181-367, gnl|loxAfr1|scaffold_2071 (31581-31390) | |
| 181-367, gnl|mm7|chr19 (43409551-43409742) | |
| 181-367, gnl|Mm7|chr19 (43409737-43409551) | |
| 181-367, gnl|monDom2|scaffold_14 (22835200-22835009) | |
| 181-367, gnl|oryCun1|scaffold_214183 (126745-126553) | |
| 181-367, gnl|panTro1|chr8 (102915560-102915751) | |
| 181-367, gnl|rheMac2|chr9 (99030580-99030771) | |
| 181-367, gnl|rn3|chr1 (247447146-247446955) | |
| 181-367, gnl|tetNig1|chr17 (5194058-5194244) | |
| 181-367, gnl|xenTro1|scaffold_51 (2905207-2905398) | |
| 488-601, gnl|bosTau2|chr26 (11730455-11730342) | |
| 488-601, gnl|canFam2|chr28 (15356207-15356356) | |
| 488-601, gnl|danRer3|chr13 (41022181-41022035) | |
| 488-601, gnl|echTel1|scaffold_231811 (2046-2157) | |
| 488-601, gnl|fr1|chrUn (156937136-156937282) | |
| 488-601, gnl|galGal2|chr6 (21306947-21306800) | |
| 488-601, gnl|hg17|chr10 (101155873-101156022) | |
| 488-601, gnl|Hg17|chr10 (101155997-101155884) | |
| 488-601, gnl|loxAfr1|scaffold_2071 (39110-38961) | |
| 488-601, gnl|mm7|chr19 (43401184-43401333) | |
| 488-601, gnl|Mm7|chr19 (43401308-43401195) | |
| 488-601, gnl|monDom2|scaffold_14 (22844184-22844057) | |
| 488-601, gnl|oryCun1|scaffold_214183 (137932-137783) | |
| 488-601, gnl|panTro1|chr8 (102901004-102901153) | |
| 488-601, gnl|rheMac2|chr9 (99017728-99017877) | |
| 488-601, gnl|rn3|chr1 (247455335-247455186) | |
| 488-601, gnl|tetNig1|chr17 (5193495-5193623) | |
| 488-601, gnl|xenTro1|scaffold_51 (2904033-2904169) | |
| 702-865, gnl|bosTau2|chr26 (11728851-11728688) | |
| 702-865, gnl|canFam2|chr28 (15353820-15353977) | |
| 702-865, gnl|danRer3|chr13 (41026776-41026624) | |
| 702-865, gnl|dasNov1|scaffold_43449 (7802-7947) | |
| 702-865, gnl|echTel1|scaffold_217402 (4156-4007) | |
| 702-865, gnl|fr1|chrUn (156936660-156936819) | |
| 702-865, gnl|galGal2|chr6 (21308004-21307847) | |
| 702-865, gnl|hg17|chr10 (101153452-101153612) | |
| 702-865, gnl|Hg17|chr10 (101153626-101153463) | |
| 702-865, gnl|loxAfr1|scaffold_2071 (41792-41635) | |
| 702-865, gnl|mm7|chr19 (43398633-43398790) | |
| 702-865, gnl|Mm7|chr19 (43398804-43398641) | |
| 702-865, gnl|monDom2|scaffold_14 (22845403-22845246) | |
| 702-865, gnl|oryCun1|scaffold_203734 (54101-53945) | |
| 702-865, gnl|panTro1|chr8 (102898573-102898733) | |
| 702-865, gnl|rheMac2|chr8 (38386008-38386150) | |
| 702-865, gnl|rn3|chr1 (247457484-247457327) | |
| 702-865, gnl|tetNig1|chr17 (5193066-5193229) | |
| 702-865, gnl|xenTro1|scaffold_51 (2902154-2902311) | |
| 1167-1944, gnl|bosTau2|chr26 (11724676-11723901) | |
| 1167-1944, gnl|canFam2|chr28 (15348989-15349539) | |
| 1167-1944, gnl|echTel1|scaffold_217402 (6863-6308) | |
| 1167-1944, gnl|Hg17|chr10 (101147433-101146653) | |
| 1167-1944, gnl|hg17|chr8 (95055633-95056188) | |
| 1167-1944, gnl|loxAfr1|scaffold_2071 (48942-48397) | |
| 1167-1944, gnl|mm7|chr19 (43393867-43394407) | |
| 1167-1944, gnl|Mm7|chr19 (43394430-43393664) | |
| 1167-1944, gnl|monDom2|scaffold_14 (22856001-22855439) | |
| 1167-1944, gnl|oryCun1|scaffold_214183 (147165-146634) | |
| 1167-1944, gnl|panTro1|chr7 (97286524-97287078) | |
| 1167-1944, gnl|rheMac2|chr8 (96557983-96558537) | |
| 1167-1944, gnl|rn3|chr1 (247461778-247461245) |
| Aligned organism(s): 69 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 181-367, gnl|bosTau2|chr26 (11738940-11738754) | |
| 181-367, gnl|canFam2|chr28 (15364841-15365032) | |
| 181-367, gnl|danRer3|chr13 (41018868-41018680) | |
| 181-367, gnl|dasNov1|scaffold_9022 (32639-32448) | |
| 181-367, gnl|echTel1|scaffold_231811 (2275-2465) | |
| 181-367, gnl|fr1|chrUn (156937553-156937742) | |
| 181-367, gnl|galGal2|chr6 (21306442-21306251) | |
| 181-367, gnl|hg17|chr10 (101170368-101170559) | |
| 181-367, gnl|Hg17|chr10 (101170554-101170368) | |
| 181-367, gnl|loxAfr1|scaffold_2071 (31581-31390) | |
| 181-367, gnl|mm7|chr19 (43409551-43409742) | |
| 181-367, gnl|Mm7|chr19 (43409737-43409551) | |
| 181-367, gnl|monDom2|scaffold_14 (22835200-22835009) | |
| 181-367, gnl|oryCun1|scaffold_214183 (126745-126553) | |
| 181-367, gnl|panTro1|chr8 (102915560-102915751) | |
| 181-367, gnl|rheMac2|chr9 (99030580-99030771) | |
| 181-367, gnl|rn3|chr1 (247447146-247446955) | |
| 181-367, gnl|tetNig1|chr17 (5194058-5194244) | |
| 181-367, gnl|xenTro1|scaffold_51 (2905207-2905398) | |
| 488-601, gnl|bosTau2|chr26 (11730455-11730342) | |
| 488-601, gnl|canFam2|chr28 (15356207-15356356) | |
| 488-601, gnl|danRer3|chr13 (41022181-41022035) | |
| 488-601, gnl|echTel1|scaffold_231811 (2046-2157) | |
| 488-601, gnl|fr1|chrUn (156937136-156937282) | |
| 488-601, gnl|galGal2|chr6 (21306947-21306800) | |
| 488-601, gnl|hg17|chr10 (101155873-101156022) | |
| 488-601, gnl|Hg17|chr10 (101155997-101155884) | |
| 488-601, gnl|loxAfr1|scaffold_2071 (39110-38961) | |
| 488-601, gnl|mm7|chr19 (43401184-43401333) | |
| 488-601, gnl|Mm7|chr19 (43401308-43401195) | |
| 488-601, gnl|monDom2|scaffold_14 (22844184-22844057) | |
| 488-601, gnl|oryCun1|scaffold_214183 (137932-137783) | |
| 488-601, gnl|panTro1|chr8 (102901004-102901153) | |
| 488-601, gnl|rheMac2|chr9 (99017728-99017877) | |
| 488-601, gnl|rn3|chr1 (247455335-247455186) | |
| 488-601, gnl|tetNig1|chr17 (5193495-5193623) | |
| 488-601, gnl|xenTro1|scaffold_51 (2904033-2904169) | |
| 702-865, gnl|bosTau2|chr26 (11728851-11728688) | |
| 702-865, gnl|canFam2|chr28 (15353820-15353977) | |
| 702-865, gnl|danRer3|chr13 (41026776-41026624) | |
| 702-865, gnl|dasNov1|scaffold_43449 (7802-7947) | |
| 702-865, gnl|echTel1|scaffold_217402 (4156-4007) | |
| 702-865, gnl|fr1|chrUn (156936660-156936819) | |
| 702-865, gnl|galGal2|chr6 (21308004-21307847) | |
| 702-865, gnl|hg17|chr10 (101153452-101153612) | |
| 702-865, gnl|Hg17|chr10 (101153626-101153463) | |
| 702-865, gnl|loxAfr1|scaffold_2071 (41792-41635) | |
| 702-865, gnl|mm7|chr19 (43398633-43398790) | |
| 702-865, gnl|Mm7|chr19 (43398804-43398641) | |
| 702-865, gnl|monDom2|scaffold_14 (22845403-22845246) | |
| 702-865, gnl|oryCun1|scaffold_203734 (54101-53945) | |
| 702-865, gnl|panTro1|chr8 (102898573-102898733) | |
| 702-865, gnl|rheMac2|chr8 (38386008-38386150) | |
| 702-865, gnl|rn3|chr1 (247457484-247457327) | |
| 702-865, gnl|tetNig1|chr17 (5193066-5193229) | |
| 702-865, gnl|xenTro1|scaffold_51 (2902154-2902311) | |
| 1167-1944, gnl|bosTau2|chr26 (11724676-11723901) | |
| 1167-1944, gnl|canFam2|chr28 (15348989-15349539) | |
| 1167-1944, gnl|echTel1|scaffold_217402 (6863-6308) | |
| 1167-1944, gnl|Hg17|chr10 (101147433-101146653) | |
| 1167-1944, gnl|hg17|chr8 (95055633-95056188) | |
| 1167-1944, gnl|loxAfr1|scaffold_2071 (48942-48397) | |
| 1167-1944, gnl|mm7|chr19 (43393867-43394407) | |
| 1167-1944, gnl|Mm7|chr19 (43394430-43393664) | |
| 1167-1944, gnl|monDom2|scaffold_14 (22856001-22855439) | |
| 1167-1944, gnl|oryCun1|scaffold_214183 (147165-146634) | |
| 1167-1944, gnl|panTro1|chr7 (97286524-97287078) | |
| 1167-1944, gnl|rheMac2|chr8 (96557983-96558537) | |
| 1167-1944, gnl|rn3|chr1 (247461778-247461245) |
| Expressed library(ies): 49 entry(ies) | More info |
| Expressed library(ies): 49 entry(ies) | Help | Less info |
| vin (1.66279) | |
| isp (1.35338) | |
| ssp (1.08416) | |
| hea (1.02249) | |
| ctl (0.765345) | |
| hlv (0.696282) | |
| mas (0.630915) | |
| spc (0.566829) | |
| che (0.545256) | |
| hyp (0.42851) | |
| nms (0.427716) | |
| ute (0.398353) | |
| cov (0.396458) | |
| bla (0.373042) | |
| nep (0.36785) | |
| sto (0.359648) | |
| ton (0.351) | |
| cut (0.339847) | |
| cje (0.330469) | |
| fco (0.314416) | |
| sme (0.305437) | |
| lun (0.300978) | |
| bfe (0.299715) | |
| jej (0.296765) | |
| cst (0.280073) | |
| ste (0.270416) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| cly (0.241284) | |
| mgp (0.230681) | |
| jca (0.22792) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| col (0.195008) | |
| ldo (0.194005) | |
| cmu (0.186393) | |
| gul (0.177588) | |
| fty (0.17584) | |
| rec (0.17307) | |
| duo (0.172801) | |
| nje (0.16592) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| pla (0.133672) | |
| ova (0.129132) | |
| cbr (0.127975) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| med (0.116252) |
| Expressed library(ies): 49 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (1.66279) | |
| isp (1.35338) | |
| ssp (1.08416) | |
| hea (1.02249) | |
| ctl (0.765345) | |
| hlv (0.696282) | |
| mas (0.630915) | |
| spc (0.566829) | |
| che (0.545256) | |
| hyp (0.42851) | |
| nms (0.427716) | |
| ute (0.398353) | |
| cov (0.396458) | |
| bla (0.373042) | |
| nep (0.36785) | |
| sto (0.359648) | |
| ton (0.351) | |
| cut (0.339847) | |
| cje (0.330469) | |
| fco (0.314416) | |
| sme (0.305437) | |
| lun (0.300978) | |
| bfe (0.299715) | |
| jej (0.296765) | |
| cst (0.280073) | |
| ste (0.270416) | |
| lyg (0.266205) | |
| kid (0.259471) | |
| cly (0.241284) | |
| mgp (0.230681) | |
| jca (0.22792) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| col (0.195008) | |
| ldo (0.194005) | |
| cmu (0.186393) | |
| gul (0.177588) | |
| fty (0.17584) | |
| rec (0.17307) | |
| duo (0.172801) | |
| nje (0.16592) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| pla (0.133672) | |
| ova (0.129132) | |
| cbr (0.127975) | |
| tra (0.123092) | |
| ebs (0.118301) | |
| med (0.116252) |