Ss1.1-rssp24_n2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGTGGCTGGCGAAATTAACCCTTCAGGGACTGCGGCTGCCCTGCGCCCCGCCTCCTCCT CTTACCTGGACCCCTCAGGAGATGGGTGCCCCCATCGGCACACTGTCCTTTGGCCACCGG ACATCATGCCTCCCAAGAAGGATGTTCCCGTTCCCGTGAAGAAACCAGTGGGGCCCCCTA ACCCCAAGCCTGCTGCGCCTGCTGCCAAGCCAGCAGCAGGGGCCCCTCCAGCCAAGCCAC CACCAGCGTCAGCGTCAGCGCCAGCACCAGCACCAGCACCAGCACCAGCTGTCCCTTCAG CCTCTGCGAAGATCCAGGAGCCCCCCGTCGATCTCTCCAAAGTGGTGATCGAGTTTAACA AGGACCAGCTGGAGGAGTTCAAGGAAGCCTTCGAGCTGTTTGACCGAGTAGGGGATGGCA AGATCCTGTTCGGCCAGTGTGGGGACGTGATGAGGGCCCTGGGCCAGAACCCCACCAACG CCGAGGTGCTCAGAGTCCTGGGGTACCCCAAGAGTGATGAGCTGAAGACCCGACGTATAG ACTTTGAGACTTTCCTGCCCATGCTCCAGGCAGTGGCCAAGATCCAGGGGCAAGGCACAT ACCAGGACTACCTGGAGGGGCTTCGCGTGTTTGACAAAGAGGGGAACGGCAAAGTCATGG GAGCAGAGCTCAGACATGTCCTCACTACCCTGGGAGAGAGGATGACTGAAGAGGAGGTGG AGACAGTTCTGGCAGGACATGAGGACAGCAACGGCTGCATCAACTATGAAGCCTTCCTGA AGCACATCCTGAGCGTCTGAGCTCTACAGGTGCAGTGGGGCTCGACAAGGAGTCCCCCTA CCCCTCGCGGGCGAAAGCAAGTTCCTGCCGCTAGGAGGCCACCTATTGTTTCAAAATAAA GTGACGGTTCCTCCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGTGGCTGGCGAAATTAACCCTTCAGGGACTGCGGCTGCCCTGCGCCCCGCCTCCTCCT CTTACCTGGACCCCTCAGGAGATGGGTGCCCCCATCGGCACACTGTCCTTTGGCCACCGG ACATCATGCCTCCCAAGAAGGATGTTCCCGTTCCCGTGAAGAAACCAGTGGGGCCCCCTA ACCCCAAGCCTGCTGCGCCTGCTGCCAAGCCAGCAGCAGGGGCCCCTCCAGCCAAGCCAC CACCAGCGTCAGCGTCAGCGCCAGCACCAGCACCAGCACCAGCACCAGCTGTCCCTTCAG CCTCTGCGAAGATCCAGGAGCCCCCCGTCGATCTCTCCAAAGTGGTGATCGAGTTTAACA AGGACCAGCTGGAGGAGTTCAAGGAAGCCTTCGAGCTGTTTGACCGAGTAGGGGATGGCA AGATCCTGTTCGGCCAGTGTGGGGACGTGATGAGGGCCCTGGGCCAGAACCCCACCAACG CCGAGGTGCTCAGAGTCCTGGGGTACCCCAAGAGTGATGAGCTGAAGACCCGACGTATAG ACTTTGAGACTTTCCTGCCCATGCTCCAGGCAGTGGCCAAGATCCAGGGGCAAGGCACAT ACCAGGACTACCTGGAGGGGCTTCGCGTGTTTGACAAAGAGGGGAACGGCAAAGTCATGG GAGCAGAGCTCAGACATGTCCTCACTACCCTGGGAGAGAGGATGACTGAAGAGGAGGTGG AGACAGTTCTGGCAGGACATGAGGACAGCAACGGCTGCATCAACTATGAAGCCTTCCTGA AGCACATCCTGAGCGTCTGAGCTCTACAGGTGCAGTGGGGCTCGACAAGGAGTCCCCCTA CCCCTCGCGGGCGAAAGCAAGTTCCTGCCGCTAGGAGGCCACCTATTGTTTCAAAATAAA GTGACGGTTCCTCCCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 79-169, - strand, RNAz p=0.715267 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 79-169, - strand, RNAz p=0.715267 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 79-234, gnl|bosTau2|chr5 (33463266-33463123) | |
| 79-234, gnl|canFam2|chr10 (3456997-3457204) | |
| 79-234, gnl|dasNov1|scaffold_118866 (4512-4746) | |
| 79-234, gnl|echTel1|scaffold_325469 (76345-76554) | |
| 79-234, gnl|hg17|chr12 (54833864-54834074) | |
| 79-234, gnl|Hg17|chr12 (54833923-54834066) | |
| 79-234, gnl|loxAfr1|scaffold_146163 (3834-3634) | |
| 79-234, gnl|mm7|chr10 (127999190-127998977) | |
| 79-234, gnl|Mm7|chr10 (127999123-127998983) | |
| 79-234, gnl|oryCun1|scaffold_185462 (11395-11176) | |
| 79-234, gnl|panTro1|chr10 (56082150-56082360) | |
| 79-234, gnl|rheMac2|chr11 (53212472-53212685) | |
| 79-234, gnl|rn3|chr7 (1779088-1778876) | |
| 375-512, gnl|bosTau2|chr3 (78879704-78879561) | |
| 375-512, gnl|Hg17|chr3 (46877320-46877177) | |
| 375-512, gnl|Mm7|chr9 (110464322-110464465) | |
| 519-698, gnl|bosTau2|chr5 (33461725-33461546) | |
| 519-698, gnl|canFam2|chr10 (3458830-3458685) | |
| 519-698, gnl|danRer3|chr5 (69754322-69754177) | |
| 519-698, gnl|dasNov1|scaffold_224742 (1059-914) | |
| 519-698, gnl|echTel1|scaffold_314392 (56535-56680) | |
| 519-698, gnl|fr1|chrUn (42323328-42323473) | |
| 519-698, gnl|Hg17|chr12 (54835469-54835648) | |
| 519-698, gnl|hg17|chr2 (208959668-208959813) | |
| 519-698, gnl|loxAfr1|scaffold_38552 (15719-15571) | |
| 519-698, gnl|mm7|chr10 (127996759-127996904) | |
| 519-698, gnl|Mm7|chr10 (127996933-127996754) | |
| 519-698, gnl|monDom2|scaffold_3 (99961745-99961870) | |
| 519-698, gnl|oryCun1|scaffold_185462 (6512-6657) | |
| 519-698, gnl|panTro1|chr13 (99031976-99032121) | |
| 519-698, gnl|rheMac2|chr12 (72148882-72149027) | |
| 519-698, gnl|rn3|chrX (62112835-62112690) | |
| 519-698, gnl|tetNig1|chr4 (4778044-4777899) | |
| 519-698, gnl|xenTro1|scaffold_85 (2217512-2217373) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 79-234, gnl|bosTau2|chr5 (33463266-33463123) | |
| 79-234, gnl|canFam2|chr10 (3456997-3457204) | |
| 79-234, gnl|dasNov1|scaffold_118866 (4512-4746) | |
| 79-234, gnl|echTel1|scaffold_325469 (76345-76554) | |
| 79-234, gnl|hg17|chr12 (54833864-54834074) | |
| 79-234, gnl|Hg17|chr12 (54833923-54834066) | |
| 79-234, gnl|loxAfr1|scaffold_146163 (3834-3634) | |
| 79-234, gnl|mm7|chr10 (127999190-127998977) | |
| 79-234, gnl|Mm7|chr10 (127999123-127998983) | |
| 79-234, gnl|oryCun1|scaffold_185462 (11395-11176) | |
| 79-234, gnl|panTro1|chr10 (56082150-56082360) | |
| 79-234, gnl|rheMac2|chr11 (53212472-53212685) | |
| 79-234, gnl|rn3|chr7 (1779088-1778876) | |
| 375-512, gnl|bosTau2|chr3 (78879704-78879561) | |
| 375-512, gnl|Hg17|chr3 (46877320-46877177) | |
| 375-512, gnl|Mm7|chr9 (110464322-110464465) | |
| 519-698, gnl|bosTau2|chr5 (33461725-33461546) | |
| 519-698, gnl|canFam2|chr10 (3458830-3458685) | |
| 519-698, gnl|danRer3|chr5 (69754322-69754177) | |
| 519-698, gnl|dasNov1|scaffold_224742 (1059-914) | |
| 519-698, gnl|echTel1|scaffold_314392 (56535-56680) | |
| 519-698, gnl|fr1|chrUn (42323328-42323473) | |
| 519-698, gnl|Hg17|chr12 (54835469-54835648) | |
| 519-698, gnl|hg17|chr2 (208959668-208959813) | |
| 519-698, gnl|loxAfr1|scaffold_38552 (15719-15571) | |
| 519-698, gnl|mm7|chr10 (127996759-127996904) | |
| 519-698, gnl|Mm7|chr10 (127996933-127996754) | |
| 519-698, gnl|monDom2|scaffold_3 (99961745-99961870) | |
| 519-698, gnl|oryCun1|scaffold_185462 (6512-6657) | |
| 519-698, gnl|panTro1|chr13 (99031976-99032121) | |
| 519-698, gnl|rheMac2|chr12 (72148882-72149027) | |
| 519-698, gnl|rn3|chrX (62112835-62112690) | |
| 519-698, gnl|tetNig1|chr4 (4778044-4777899) | |
| 519-698, gnl|xenTro1|scaffold_85 (2217512-2217373) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| ssp (2.0328) | |
| ese (1.01202) | |
| nms (0.427716) | |
| mas (0.42061) | |
| nep (0.36785) | |
| eru (0.240096) | |
| eye (0.170503) | |
| hyp (0.142837) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| jca (0.11396) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ssp (2.0328) | |
| ese (1.01202) | |
| nms (0.427716) | |
| mas (0.42061) | |
| nep (0.36785) | |
| eru (0.240096) | |
| eye (0.170503) | |
| hyp (0.142837) | |
| eep (0.122564) | |
| ebs (0.118301) | |
| jca (0.11396) |