Non-Coding RNA Search

Ss1.1-rssp25_b10.5

Sequence:


               
               TCCTGTCTTTGATCGCCTCTTTGACATTTTTGCCAAAATACCACTAGTGGAAAGTCAGGC
TAGCTGTGCTGGTATGGGAATAGCAGCCTCACACTGGCTTATGGACTGTTCTGTAGATTA
ATGCAAGTGGAGCTGTCTTTAATTTAACTTATTGCTAGAACATAGGGTTTAAAGATGAAT
TGAAAACTTAAATGGAATGGCCCTCATTCAATAAGTTCTGTGGTTCCAGTAAGGATTTTT
ATGTACATATGCTCTTGTCTTAAGTTTTGGGTACTTTCTGTCTCATCTGTTTTAGCTGTG
CATTTTTTTTTCAGGGTGTACTCTACCAGACATGGAATAGTTTAAATCCCAAGCTGATAG
ACTTAGAACATAAGGTATATTTATCCTTATGGGTTAGGCGTTGCCAGTTTTCAGAAGTTC
CTGATTGGTTGACAGTATTAACACTAAATTGCAGTTTACAGTATTTCTACATTACAGCCA
TATGTAACATCAAGCCATTGATTGTGTATTTTTCTTTACTGTGGCTTGTACGTCCTTATT
CAGCCTTATCCAGGTTGGTTTTGCTGTTCTCTCTCTCCTAGGCCGGAAGGCTTGCCTGAG
GAGAATCAGAGCTACTTTAGGTTTTGGTTAACAGGTGCTTGGCAGGTGGCTGTGGGATTT
TTTTTGGTCCCTTCTTCTTAACTTAAACCCACCACAAAAATTATTAATCACTTTAATAGA
AACATTAAACACCACAAAAATAGAGAAAATTCAGGTCTGTATGTCATTTATTATGTTGAT
ATTTTCAGAGAAATCCTGATTTTTAAGCTGCCGCAGCTCCTTCCTCAGGAATTGGGCTGC
CCCTTCTCGTTCCACTTGAGTCTTCCCCACTGTACCTCAGTGGCACTCGTTCGGATGGGT
TGAAAAGCCCCCATGGGTTGTAGAAGCTGGTGGTGGTTCTGAGAAACCTCGTGGTGCAGT
GTGTGAAAATTCAGGTGCCAGGAGCTAACTGGTAGAAAAATCCTAAAGGAAGAGCCCTGT
GCATAAACATTCTGTCCAATTTCGAGAGCCTTGTAAGTGTGTCAGTTTTTCTCTCTGAAA
ACACTCCTTCCCCAAATAATCATTGTAGGAAAATAAGCTAAAATCACTATCAGATAATAA
ATATTTAACTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCTGTCTTTGATCGCCTCTTTGACATTTTTGCCAAAATACCACTAGTGGAAAGTCAGGC
TAGCTGTGCTGGTATGGGAATAGCAGCCTCACACTGGCTTATGGACTGTTCTGTAGATTA
ATGCAAGTGGAGCTGTCTTTAATTTAACTTATTGCTAGAACATAGGGTTTAAAGATGAAT
TGAAAACTTAAATGGAATGGCCCTCATTCAATAAGTTCTGTGGTTCCAGTAAGGATTTTT
ATGTACATATGCTCTTGTCTTAAGTTTTGGGTACTTTCTGTCTCATCTGTTTTAGCTGTG
CATTTTTTTTTCAGGGTGTACTCTACCAGACATGGAATAGTTTAAATCCCAAGCTGATAG
ACTTAGAACATAAGGTATATTTATCCTTATGGGTTAGGCGTTGCCAGTTTTCAGAAGTTC
CTGATTGGTTGACAGTATTAACACTAAATTGCAGTTTACAGTATTTCTACATTACAGCCA
TATGTAACATCAAGCCATTGATTGTGTATTTTTCTTTACTGTGGCTTGTACGTCCTTATT
CAGCCTTATCCAGGTTGGTTTTGCTGTTCTCTCTCTCCTAGGCCGGAAGGCTTGCCTGAG
GAGAATCAGAGCTACTTTAGGTTTTGGTTAACAGGTGCTTGGCAGGTGGCTGTGGGATTT
TTTTTGGTCCCTTCTTCTTAACTTAAACCCACCACAAAAATTATTAATCACTTTAATAGA
AACATTAAACACCACAAAAATAGAGAAAATTCAGGTCTGTATGTCATTTATTATGTTGAT
ATTTTCAGAGAAATCCTGATTTTTAAGCTGCCGCAGCTCCTTCCTCAGGAATTGGGCTGC
CCCTTCTCGTTCCACTTGAGTCTTCCCCACTGTACCTCAGTGGCACTCGTTCGGATGGGT
TGAAAAGCCCCCATGGGTTGTAGAAGCTGGTGGTGGTTCTGAGAAACCTCGTGGTGCAGT
GTGTGAAAATTCAGGTGCCAGGAGCTAACTGGTAGAAAAATCCTAAAGGAAGAGCCCTGT
GCATAAACATTCTGTCCAATTTCGAGAGCCTTGTAAGTGTGTCAGTTTTTCTCTCTGAAA
ACACTCCTTCCCCAAATAATCATTGTAGGAAAATAAGCTAAAATCACTATCAGATAATAA
ATATTTAACTCC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1152, gnl|bosTau2|chr25 (31350721-31351847)
               

               
               1-1152, gnl|Hg17|chr7 (75603416-75602289)
               

               
               1-1152, gnl|Mm7|chr5 (134882147-134881020)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1152, gnl|bosTau2|chr25 (31350721-31351847)
               

               
               1-1152, gnl|Hg17|chr7 (75603416-75602289)
               

               
               1-1152, gnl|Mm7|chr5 (134882147-134881020)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               sme (0.610874)
               

               
               cte (0.29274)
               

               
               ssp (0.271039)
               

               
               pla (0.267344)
               

               
               cov (0.264306)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               ldo (0.0970026)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sme (0.610874)
               

               
               cte (0.29274)
               

               
               ssp (0.271039)
               

               
               pla (0.267344)
               

               
               cov (0.264306)
               

               
               fcc (0.197785)
               

               
               nep (0.183925)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               fco (0.157208)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               ldo (0.0970026)

	1-1152, gnl\|bosTau2\|chr25 (31350721-31351847)
	1-1152, gnl\|Hg17\|chr7 (75603416-75602289)
	1-1152, gnl\|Mm7\|chr5 (134882147-134881020)

	sme (0.610874)
	cte (0.29274)
	ssp (0.271039)
	pla (0.267344)
	cov (0.264306)
	fcc (0.197785)
	nep (0.183925)
	duo (0.172801)
	fhi (0.169578)
	cki (0.165235)
	fco (0.157208)
	ova (0.129132)
	sug (0.127291)
	ese (0.126502)
	cly (0.120642)
	ldo (0.0970026)