Non-Coding RNA Search

Ss1.1-rssp25_c9.5

Sequence:


               
               TCTTCCCCCAAAAATGTGGCTGCGGAAGAGAGAGCAGCCCCCAGCCCTGCCCCTGCAGAA
GCCACACCCCCAAAACCAGGAGAAGCTGAAGTTCCCGCAAAACATCCAGGTGTGCTGAAA
GTGGAAGCCATCCTGGAGAAGGTGCAAGGGCTGGAGCAGGCTGTGGACAACTTTGAAGGC
AAGAAGACAGACAAAAAGTACCTGATGATAGAAGAGTATTTGACCAAAGAGCTACTGGCC
CTGGATTCGGTAGACCCTGAGGGACGAGCTGATGTCCGCCAGGCCAGGAGAGACGGCGTC
AGGAAGGTTCAGACCATTCTGGAAAAACTTGAACAGAAAGCAATCGATGTCCCAGGTCAA
GTCCAGGTCTATGAACTCCAGCCCAGCTCTCTTGAAACCGATCAGCCACTGCAGGAAATC
ATGGAGATGGCAGCAGACAAGAGCAAGAAAAGTACGGGAAATGAAGAGGATCTCAAAACT
GAAACCCAGCAGCCAGAAGCCAAGGAAGCAGCAGCTCCAACCCCCAGCAGCACGACAGAT
GCAGCTGCTAACCCAGCAGCACCGTAGTCTCCACTAAGTAAAAATCAGACCTGGAGGCTG
GGAACTGATTGTGTGCTTTAGGGAATTTTAAGTTGCATGCATTTCAGGGACTTAAAATCA
GTTGGTTTTTACTCTTCATAGCCGCTTGATACGCAGTAACCTGGGTGGAGGCAAAACACA
CTAATGAAAGGGCTAAAAGGAAAACGATGCTTTTCTTCTGTATTATTCTGTACAAATAAG
TTGCTTGTTACAGAAGTTTAACCCCATCGCTTATTGTTTTTGGGCCCTTTCTGTATGGGC
CCCGGATGTCAGCCATGGCTATGAACTGTCTTCCTATAGTTTTGGACCGAAGGAGTACTG
GGGCGGGGGGGGCAGTTAGACAGGCAGTCAGTTTCCCATCACCAAGTATGAAACCCGTTT
TTCAGAAATGTTGCCATTTTAATGGGATGACCTTCATCATCTCATAGCTAAAATACGTTA
GATGACATAAAATGTGTATGGAGCCATAGGAATATATCTGTATGTTGGATGACTTTAGTG
CTACTTTAAAAAAAGGAAATAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTCCCCCAAAAATGTGGCTGCGGAAGAGAGAGCAGCCCCCAGCCCTGCCCCTGCAGAA
GCCACACCCCCAAAACCAGGAGAAGCTGAAGTTCCCGCAAAACATCCAGGTGTGCTGAAA
GTGGAAGCCATCCTGGAGAAGGTGCAAGGGCTGGAGCAGGCTGTGGACAACTTTGAAGGC
AAGAAGACAGACAAAAAGTACCTGATGATAGAAGAGTATTTGACCAAAGAGCTACTGGCC
CTGGATTCGGTAGACCCTGAGGGACGAGCTGATGTCCGCCAGGCCAGGAGAGACGGCGTC
AGGAAGGTTCAGACCATTCTGGAAAAACTTGAACAGAAAGCAATCGATGTCCCAGGTCAA
GTCCAGGTCTATGAACTCCAGCCCAGCTCTCTTGAAACCGATCAGCCACTGCAGGAAATC
ATGGAGATGGCAGCAGACAAGAGCAAGAAAAGTACGGGAAATGAAGAGGATCTCAAAACT
GAAACCCAGCAGCCAGAAGCCAAGGAAGCAGCAGCTCCAACCCCCAGCAGCACGACAGAT
GCAGCTGCTAACCCAGCAGCACCGTAGTCTCCACTAAGTAAAAATCAGACCTGGAGGCTG
GGAACTGATTGTGTGCTTTAGGGAATTTTAAGTTGCATGCATTTCAGGGACTTAAAATCA
GTTGGTTTTTACTCTTCATAGCCGCTTGATACGCAGTAACCTGGGTGGAGGCAAAACACA
CTAATGAAAGGGCTAAAAGGAAAACGATGCTTTTCTTCTGTATTATTCTGTACAAATAAG
TTGCTTGTTACAGAAGTTTAACCCCATCGCTTATTGTTTTTGGGCCCTTTCTGTATGGGC
CCCGGATGTCAGCCATGGCTATGAACTGTCTTCCTATAGTTTTGGACCGAAGGAGTACTG
GGGCGGGGGGGGCAGTTAGACAGGCAGTCAGTTTCCCATCACCAAGTATGAAACCCGTTT
TTCAGAAATGTTGCCATTTTAATGGGATGACCTTCATCATCTCATAGCTAAAATACGTTA
GATGACATAAAATGTGTATGGAGCCATAGGAATATATCTGTATGTTGGATGACTTTAGTG
CTACTTTAAAAAAAGGAAATAAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|46015822|pdb|1UK5|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|46015822|pdb|1UK5|A

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-169, - strand, RNAz p=0.958204

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-169, - strand, RNAz p=0.958204

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-169, gnl|bosTau2|chr26 (25492629-25492461)
               

               
               1-169, gnl|Hg17|chr10 (121426209-121426376)
               

               
               1-169, gnl|Mm7|chr7 (124642388-124642555)
               


               
               326-1104, gnl|bosTau2|chr26 (25492410-25491630)
               

               
               326-1104, gnl|Hg17|chr10 (121426534-121427303)
               

               
               326-1104, gnl|Mm7|chr7 (124642713-124643519)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-169, gnl|bosTau2|chr26 (25492629-25492461)
               

               
               1-169, gnl|Hg17|chr10 (121426209-121426376)
               

               
               1-169, gnl|Mm7|chr7 (124642388-124642555)
               


               
               326-1104, gnl|bosTau2|chr26 (25492410-25491630)
               

               
               326-1104, gnl|Hg17|chr10 (121426534-121427303)
               

               
               326-1104, gnl|Mm7|chr7 (124642713-124643519)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               ssp (0.271039)
               

               
               pan (0.23596)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               cut (0.169924)
               

               
               tbr (0.154178)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               med (0.116252)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.271039)
               

               
               pan (0.23596)
               

               
               hea (0.204499)
               

               
               nlu (0.191681)
               

               
               cut (0.169924)
               

               
               tbr (0.154178)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               liv (0.146284)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               ret (0.128733)
               

               
               bla (0.124347)
               

               
               med (0.116252)

	1-169, gnl\|bosTau2\|chr26 (25492629-25492461)
	1-169, gnl\|Hg17\|chr10 (121426209-121426376)
	1-169, gnl\|Mm7\|chr7 (124642388-124642555)

	326-1104, gnl\|bosTau2\|chr26 (25492410-25491630)
	326-1104, gnl\|Hg17\|chr10 (121426534-121427303)
	326-1104, gnl\|Mm7\|chr7 (124642713-124643519)

	ssp (0.271039)
	pan (0.23596)
	hea (0.204499)
	nlu (0.191681)
	cut (0.169924)
	tbr (0.154178)
	cli (0.152812)
	cag (0.151194)
	liv (0.146284)
	ste (0.135208)
	ova (0.129132)
	ret (0.128733)
	bla (0.124347)
	med (0.116252)