Non-Coding RNA Search

Ss1.1-rssp25_e1.5

Sequence:


               
               ATGCACAGAGAGTGCCAAACAGGATCAGCCCAGAGAGGACCGAGGCACCCTGCAGTTAAA
GTGGCAAAAATGAAAGCTAAACAGAGAATATAAAGTCACAATGGCCAAGAACTTCATGGG
GGAAGACACTGGACATACAAGTCCATGAACCTAAAAGAACACCTGGTTACCTCAATGCAA
AAAGACTTTCTTCTCCAAAACACATTATATCAAAACTGTTAAAAGTCAATGACAAAGAAT
TGTAAAGGCAGCGGTCCCGTGAGAAGCGATGTTTGCCTGGAAGCCGAGCGTTGTGTTGGT
GGCCCCAGCGGGAATAAGAACAGCTATTTTACTGCCAGTGACCTGCCCACAGTATCACTC
CACAAGACGTCGCCACCGGAAACTGGTTCTGCAGCCACAGGTGGGCAGCAGTCTCAGGAT
GAACAGAGGAAGGAAACATTTCCCGGCTTGGCCGACGACTCCATCTGGAGAATGATAGAA
CAAACGCCTGAGTGCGTTCTGATGACCTATCAGGTGCCCGAGAGGGTGAAAGAAATCGTA
CTGAGAGAAGACCTAGAAAAACTCGAAAGCATGAGGCGGCGGCAGCCACACTTTTCTCAC
GGACAGAGGAAGGAGCTGGCCGCCGTGTATGCGTGGATTCAGAGCCAGACTGTCCCTCAA
GAAAGGGACACCCAGATATGACTCCCGCCTGCTCTCGTTCCTTTCTGGAGGCTGTGTCCC
TTGTGGAAACAAAGATTCAGCCGGGGAAGCCGGTGCTGCTACAGAGTCCCGTGGTCGGGA
CCCAGCAGGAGATGGCAACTGAGTGACTCTGGAGATCTGCCTGCACCCCGTCTCCAGACC
TGCTGGCCATCTGGACTGCCTGGTGATTCTAAGCCCCTCGGTCTTAAATGACCGCAACGT
TAGCGTTGAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGCACAGAGAGTGCCAAACAGGATCAGCCCAGAGAGGACCGAGGCACCCTGCAGTTAAA
GTGGCAAAAATGAAAGCTAAACAGAGAATATAAAGTCACAATGGCCAAGAACTTCATGGG
GGAAGACACTGGACATACAAGTCCATGAACCTAAAAGAACACCTGGTTACCTCAATGCAA
AAAGACTTTCTTCTCCAAAACACATTATATCAAAACTGTTAAAAGTCAATGACAAAGAAT
TGTAAAGGCAGCGGTCCCGTGAGAAGCGATGTTTGCCTGGAAGCCGAGCGTTGTGTTGGT
GGCCCCAGCGGGAATAAGAACAGCTATTTTACTGCCAGTGACCTGCCCACAGTATCACTC
CACAAGACGTCGCCACCGGAAACTGGTTCTGCAGCCACAGGTGGGCAGCAGTCTCAGGAT
GAACAGAGGAAGGAAACATTTCCCGGCTTGGCCGACGACTCCATCTGGAGAATGATAGAA
CAAACGCCTGAGTGCGTTCTGATGACCTATCAGGTGCCCGAGAGGGTGAAAGAAATCGTA
CTGAGAGAAGACCTAGAAAAACTCGAAAGCATGAGGCGGCGGCAGCCACACTTTTCTCAC
GGACAGAGGAAGGAGCTGGCCGCCGTGTATGCGTGGATTCAGAGCCAGACTGTCCCTCAA
GAAAGGGACACCCAGATATGACTCCCGCCTGCTCTCGTTCCTTTCTGGAGGCTGTGTCCC
TTGTGGAAACAAAGATTCAGCCGGGGAAGCCGGTGCTGCTACAGAGTCCCGTGGTCGGGA
CCCAGCAGGAGATGGCAACTGAGTGACTCTGGAGATCTGCCTGCACCCCGTCTCCAGACC
TGCTGGCCATCTGGACTGCCTGGTGATTCTAAGCCCCTCGGTCTTAAATGACCGCAACGT
TAGCGTTGAATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|11321330|gb|AAG34119.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|11321330|gb|AAG34119.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               119-237, + strand, RNAz p=0.834152

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-237, + strand, RNAz p=0.834152

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               119-254, gnl|bosTau2|chr14 (21743110-21743245)
               


               
               122-252, gnl|bosTau2|chr10 (16475690-16475821)
               


               
               523-678, gnl|bosTau2|chr16 (29987968-29988123)
               

               
               523-678, gnl|Hg17|chr1 (7831323-7831478)
               

               
               523-678, gnl|Mm7|chr4 (149997922-149997767)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               119-254, gnl|bosTau2|chr14 (21743110-21743245)
               


               
               122-252, gnl|bosTau2|chr10 (16475690-16475821)
               


               
               523-678, gnl|bosTau2|chr16 (29987968-29988123)
               

               
               523-678, gnl|Hg17|chr1 (7831323-7831478)
               

               
               523-678, gnl|Mm7|chr4 (149997922-149997767)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               ssp (0.13552)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               ssp (0.13552)

	119-254, gnl\|bosTau2\|chr14 (21743110-21743245)

	122-252, gnl\|bosTau2\|chr10 (16475690-16475821)

	523-678, gnl\|bosTau2\|chr16 (29987968-29988123)
	523-678, gnl\|Hg17\|chr1 (7831323-7831478)
	523-678, gnl\|Mm7\|chr4 (149997922-149997767)