Non-Coding RNA Search

Ss1.1-rssp25_e12.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTGGCAGGTGACTGAGCATTTATTGCAGCGCTAACAGA
GGGTGCTGGGGGCTCCATTTGGCCTCTGCCCTCCTCACGTCCCCCTCCCTCGGGTCTTCT
CCAAGCCTCCTTCCCAGCGCATTCCAGATCCTCTCTCACTTTTTTCTCATTGTTCTCCGA
AGCTGAAATCTGTTCGGGGCCCACCCTTCTTAGGGGCCTCTTGCCCTCACCCGTACCTTT
TGTCCTCCCTCCTAGGGCTGGGGGTGCTTGGCTGGGCTGGCCCCCAGCTCTCCACCCTGA
GTGCCCGCTGTCTTTGCTCCCTTCCCCTTGGAAACTCAGGAGACCCAGGCATCCCGGCCT
CTGGCTCCCTCCTCCCCTAGCCCCCAACTCTGGGCAAACTACAAAGCATCCATGGCCAGC
AGCTCCCCTCCGTGGTCCTAGCCAGGAAGGGCCCAGTCCAGGGCAGGCACAGTGGAGCCC
GAGTCACCGTCCCTCTCAGCCTCTCTGTGCTTCCTGGGACATGGAACGAGACAGGGAGCG
ACGAAGGGCGCCAGGCTTGCTGACAGGCACCACAGGGGGCAGCTGCTTGGTGATCTCGGC
CACGTCCTGGCGGTCCAGACACTGGCCACCCAGGGCTGTTTCCAGCGCCAGCAGCTCCCG
CAGCTGGATGGGGGTCTCCTCGCGCTCCTCCTTGGCGGCGCCCACTTTGGCAGGGGTGAA
GATGGGCAGCGGCAGCACCCGCTGGTAGGGCAGCTGGTACTCCTGCAGGCCACGGCCTAG
GATGCCCATTCGCATCACCAGCCAGGGGGATCGCTGCACCAGCGCCTGGCACTGCCCCTG
TTGGTGGTAGGTCTCACGCCGCTCGGCATCCTCCTCGTGCAGAGAGCAACCCTCCTCCGG
CCGCGTGGACAGCGTCAGATCCTTCCACTCGGCCCAGAAGGCCTCTCGGCGCTCACAGTT
CTCCTCGGACACCTGGCAGCTCAGCTCTGAAGTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTGGCAGGTGACTGAGCATTTATTGCAGCGCTAACAGA
GGGTGCTGGGGGCTCCATTTGGCCTCTGCCCTCCTCACGTCCCCCTCCCTCGGGTCTTCT
CCAAGCCTCCTTCCCAGCGCATTCCAGATCCTCTCTCACTTTTTTCTCATTGTTCTCCGA
AGCTGAAATCTGTTCGGGGCCCACCCTTCTTAGGGGCCTCTTGCCCTCACCCGTACCTTT
TGTCCTCCCTCCTAGGGCTGGGGGTGCTTGGCTGGGCTGGCCCCCAGCTCTCCACCCTGA
GTGCCCGCTGTCTTTGCTCCCTTCCCCTTGGAAACTCAGGAGACCCAGGCATCCCGGCCT
CTGGCTCCCTCCTCCCCTAGCCCCCAACTCTGGGCAAACTACAAAGCATCCATGGCCAGC
AGCTCCCCTCCGTGGTCCTAGCCAGGAAGGGCCCAGTCCAGGGCAGGCACAGTGGAGCCC
GAGTCACCGTCCCTCTCAGCCTCTCTGTGCTTCCTGGGACATGGAACGAGACAGGGAGCG
ACGAAGGGCGCCAGGCTTGCTGACAGGCACCACAGGGGGCAGCTGCTTGGTGATCTCGGC
CACGTCCTGGCGGTCCAGACACTGGCCACCCAGGGCTGTTTCCAGCGCCAGCAGCTCCCG
CAGCTGGATGGGGGTCTCCTCGCGCTCCTCCTTGGCGGCGCCCACTTTGGCAGGGGTGAA
GATGGGCAGCGGCAGCACCCGCTGGTAGGGCAGCTGGTACTCCTGCAGGCCACGGCCTAG
GATGCCCATTCGCATCACCAGCCAGGGGGATCGCTGCACCAGCGCCTGGCACTGCCCCTG
TTGGTGGTAGGTCTCACGCCGCTCGGCATCCTCCTCGTGCAGAGAGCAACCCTCCTCCGG
CCGCGTGGACAGCGTCAGATCCTTCCACTCGGCCCAGAAGGCCTCTCGGCGCTCACAGTT
CTCCTCGGACACCTGGCAGCTCAGCTCTGAAGTGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|3650311|emb|CAA09479.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|3650311|emb|CAA09479.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               100-418, - strand, RNAz p=0.996399
               

               
               697-856, + strand, RNAz p=0.955125

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               100-418, - strand, RNAz p=0.996399
               

               
               697-856, + strand, RNAz p=0.955125

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               24-890, gnl|bosTau2|chr19 (32312934-32312084)
               

               
               24-890, gnl|Hg17|chr17 (35076331-35075494)
               

               
               24-890, gnl|Mm7|chr11 (98493994-98493190)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-890, gnl|bosTau2|chr19 (32312934-32312084)
               

               
               24-890, gnl|Hg17|chr17 (35076331-35075494)
               

               
               24-890, gnl|Mm7|chr11 (98493994-98493190)

Expressed library(ies): 21 entry(ies)

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Expressed library(ies): 21 entry(ies)

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               mas (6.72976)
               

               
               che (2.8626)
               

               
               nms (2.35244)
               

               
               ssp (1.89728)
               

               
               ton (1.755)
               

               
               hlv (1.25331)
               

               
               nep (0.7357)
               

               
               ldo (0.582016)
               

               
               cst (0.420109)
               

               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               isp (0.300752)
               

               
               pty (0.285429)
               

               
               ste (0.270416)
               

               
               eru (0.240096)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               lnt (0.142308)
               

               
               ret (0.128733)
               

               
               jca (0.11396)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (6.72976)
               

               
               che (2.8626)
               

               
               nms (2.35244)
               

               
               ssp (1.89728)
               

               
               ton (1.755)
               

               
               hlv (1.25331)
               

               
               nep (0.7357)
               

               
               ldo (0.582016)
               

               
               cst (0.420109)
               

               
               vin (0.332557)
               

               
               tbr (0.308356)
               

               
               isp (0.300752)
               

               
               pty (0.285429)
               

               
               ste (0.270416)
               

               
               eru (0.240096)
               

               
               mgp (0.230681)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               lnt (0.142308)
               

               
               ret (0.128733)
               

               
               jca (0.11396)

	100-418, - strand, RNAz p=0.996399
	697-856, + strand, RNAz p=0.955125

	24-890, gnl\|bosTau2\|chr19 (32312934-32312084)
	24-890, gnl\|Hg17\|chr17 (35076331-35075494)
	24-890, gnl\|Mm7\|chr11 (98493994-98493190)

	mas (6.72976)
	che (2.8626)
	nms (2.35244)
	ssp (1.89728)
	ton (1.755)
	hlv (1.25331)
	nep (0.7357)
	ldo (0.582016)
	cst (0.420109)
	vin (0.332557)
	tbr (0.308356)
	isp (0.300752)
	pty (0.285429)
	ste (0.270416)
	eru (0.240096)
	mgp (0.230681)
	hea (0.204499)
	col (0.195008)
	lnt (0.142308)
	ret (0.128733)
	jca (0.11396)